pycom05g09160

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
12169728 .. 12170085
358 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGAAGTGGAGGTCGACGATAAGGAGCTGAAAGCCGCCGGAGCCGAGCCGTTGACCGACGGGCGATACGGCCTCCGTATCCATGGCTGGGACATCGAGTCCCGCAAGCGATTAATTCTCAGCTCCTCCAATACCGAACCGGTGGGAGCAAAAGCTTCATACTTGTCACATGCCGGAGATGGTGTTTGGGGACAATGGATTGTTCCTGAAGCATGTGAAGAGCGGCGCCACGATTCACTTCAATTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

84

Amino Acids

9.27

Weight (kDa)

5.06

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 15
AciI CCGC 3 cut(s) 36, 103, 223
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 139
AgsI TTSAA 1 cut(s) 242
AhdI GACNNNNNGTC 1 cut(s) 97
AluBI AGCT 3 cut(s) 28, 123, 155
AluI AGCT 3 cut(s) 28, 123, 155
AoxI GGCC 1 cut(s) 70
AseI ATTAAT 1 cut(s) 113
AsiGI ACCGGT 1 cut(s) 139
AspLEI GCGC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 225
BccI CCATC 1 cut(s) 173
BceAI ACGGC 2 cut(s) 34, 85
BciVI GTATCC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 2 cut(s) 36, 224
BlsI GCNGC 2 cut(s) 37, 225
BmeRI GACNNNNNGTC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 43, 227
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 225
BshTI ACCGGT 1 cut(s) 139
BsiSI CCGG 3 cut(s) 39, 140, 174
BslFI GGGAC 3 cut(s) 85, 104, 204
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 3 cut(s) 85, 104, 204
BsnI GGCC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 3 cut(s) 36, 103, 223
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 43, 227
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 82
BssNI GRCGYC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 173, 216
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 139
CspAI ACCGGT 1 cut(s) 139
CviAII CATG 3 cut(s) 83, 170, 213
CviJI RGCY 8 cut(s) 28, 35, 44, 49, 72, 87, 123, 155
CviKI_1 RGCY 8 cut(s) 28, 35, 44, 49, 72, 87, 123, 155
DdeI CTNAG 1 cut(s) 119
DinI GGCGCC 1 cut(s) 227
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 213
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 3 cut(s) 86, 173, 216
FaiI YATR 4 cut(s) 84, 160, 171, 214
FaqI GGGAC 3 cut(s) 85, 104, 204
FatI CATG 3 cut(s) 82, 169, 212
FauI CCCGC 1 cut(s) 110
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 36, 224
Fsp4HI GCNGC 2 cut(s) 36, 224
GlaI GCGC 1 cut(s) 227
GluI GCNGC 2 cut(s) 36, 224
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 72
HapII CCGG 3 cut(s) 39, 140, 174
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 3 cut(s) 86, 173, 216
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 2 cut(s) 16, 54
HindII GTYRAC 2 cut(s) 16, 54
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 98, 233
HpaII CCGG 3 cut(s) 39, 140, 174
Hpy166II GTNNAC 2 cut(s) 16, 54
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 16, 54
Hpy99I CGWCG 2 cut(s) 20, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 3 cut(s) 86, 173, 216
HspAI GCGC 1 cut(s) 226
KasI GGCGCC 1 cut(s) 225
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 4 cut(s) 25, 41, 128, 146
LpnPI CCDG 5 cut(s) 52, 73, 153, 187, 219
MaeIII GTNAC 1 cut(s) 165
MbiI CCGCTC 1 cut(s) 223
MboII GAAGA 1 cut(s) 230
MluCI AATT 2 cut(s) 114, 242
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 4, 83, 136
MseI TTAA 1 cut(s) 113
MspI CCGG 3 cut(s) 39, 140, 174
MwoI GCNNNNNNNGC 1 cut(s) 41
NarI GGCGCC 1 cut(s) 226
NcoI CCATGG 1 cut(s) 82
NlaIII CATG 3 cut(s) 86, 173, 216
NlaIV GGNNCC 2 cut(s) 43, 227
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 165
NspI RCATGY 2 cut(s) 173, 216
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 233
PinAI ACCGGT 1 cut(s) 139
PkrI GCNGC 2 cut(s) 37, 225
PleI GAGTC 1 cut(s) 106
PluTI GGCGCC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 106
PshBI ATTAAT 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 43, 227
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 36, 224
SchI GAGTC 1 cut(s) 107
SetI ASST 4 cut(s) 15, 30, 125, 157
SfoI GGCGCC 1 cut(s) 227
Sse9I AATT 2 cut(s) 114, 242
SsiI CCGC 3 cut(s) 36, 103, 223
SspDI GGCGCC 1 cut(s) 225
StyI CCWWGG 1 cut(s) 82
TaqI TCGA 2 cut(s) 15, 96
TaqII GACCGA 1 cut(s) 71
TasI AATT 2 cut(s) 114, 242
TauI GCSGC 2 cut(s) 38, 226
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 65
VspI ATTAAT 1 cut(s) 113
XceI RCATGY 2 cut(s) 173, 216
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.