Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12687358 .. 12688905

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACACCAAGGATTGTGCCTGAGACCTCTTTCGCTCCCATTCATCCCCTTCCTACCAGGTTAGATGGAACATCTTCAACTGCTGGGAAAAGTGCAAATATGTCTCTTGGTGATGCCAAAGAGGATGGAAAATGGACAAGAGATGCTGAGCTTATAAAATTAAAGAGTAAATTTGGAGAAGCACAAGCCAAAGAGCAAAGCAGCGCCGAATATAAATCCAAATTTGATAAAAGTAGGAGAGAAAGAGTTATCACCAAAGAAAAACCAAAGGATCCAATTCCAGAAATCGAGTGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

100

Amino Acids

11.19

Weight (kDa)

9.22

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	2 cut(s)	170, 221
AgsI	TTSAA	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	17, 108
AlwI	GGATC	2 cut(s)	266, 279
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	2 cut(s)	170, 221
Asp700I	GAANNNNTTC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	122, 244
BamHI	GGATCC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	59, 119
BciT130I	CCWGG	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	17, 108
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	2 cut(s)	103, 133
Bpu1102I	GCTNAGC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	43, 130
BseMII	CTCAG	2 cut(s)	12, 138
BseXI	GCAGC	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	17, 108
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	271
Bsp1720I	GCTNAGC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	13, 139
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	266, 279
BspTNI	GGTCTC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	21, 147
BstF5I	GGATG	2 cut(s)	43, 130
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	17, 108
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	43, 130
CfoI	GCGC	1 cut(s)	206
CsiI	ACCWGGT	1 cut(s)	56
CviJI	RGCY	2 cut(s)	151, 188
CviKI_1	RGCY	2 cut(s)	151, 188
DdeI	CTNAG	2 cut(s)	21, 147
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaiI	YATR	3 cut(s)	101, 155, 213
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	2 cut(s)	30, 137
Fsp4HI	GCNGC	1 cut(s)	202
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	202
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	207
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HphI	GGTGA	2 cut(s)	122, 244
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	21, 147
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	33, 43, 69, 70, 294
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	2 cut(s)	103, 133
MabI	ACCWGGT	1 cut(s)	56
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	66
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	4 cut(s)	158, 170, 221, 276
MnlI	CCTC	2 cut(s)	37, 115
MroXI	GAANNNNTTC	1 cut(s)	73
MseI	TTAA	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	3 cut(s)	29, 62, 153
SexAI	ACCWGGT	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	103, 133
SgeI	CNNG	9 cut(s)	21, 32, 69, 70, 96, 119, 150, 197, 293
Sse9I	AATT	4 cut(s)	158, 170, 221, 276
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	8
TaqI	TCGA	1 cut(s)	288
TasI	AATT	4 cut(s)	158, 170, 221, 276
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	32
XapI	RAATTY	2 cut(s)	170, 221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.