pycom05g10030

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
13327706 .. 13329051
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGACCACCAAACCCACTACCCTCTCTCACCACCAATGTCTTCCTCTTCCTCCTCCTCCGCTCCCACCCTCTCCCCTGCCATCAGATGAAACCACCACCACCTCTATCCTCACCTGTCTCATCGACTCTGAGCCCAATCACATGCCCTCCCCAACCTACATCTCCCGGTTCCGCGACTGTACGATCGACATCATCGCCCGCCAGGACTCCATCAACTGGATCCTAAAAGTCCACGCCCACCACCGCTTTTCTCCCCTCACCGCCTTCCTCTCCGTCAACTACTTCGACCGCTTCTTCTCCTCCCACTCTCTCCCCGACATAGCGGGTCGTGGCCGTTTCAGCTGCTGTCCGTCGCGTGTTGCCCTCGTCTTTAGCCGCAAAAATGGAGGCGCCAAACGTCCCGTTCATCCTGGACCTCCAAATCTTCGAGCCCAAAACGGTCCAGCGGATGGAGCTCCGGGTCATGGGGATTCTCAATTGGAGGCTCCGATCCATCACCCCCTTCGATTTCCTCCACCATTTTGTCTCCAACCTCCCCTCATCGTCCTCCTCTCTCCTCTCAGCCTCCTCCGATACATGATTGACTTCTTGGGTTTCTCTCCATCGACGATTGCGGCGGCCGCTGTGCTCTGCGCCGCCGGTTTAAGGGTTGATTTTGCGGCGGATGGAGATCACCAAGGGGCGCCGTTTTTCTACGCGACAGTGAACAAAGTGTGGAGTACCTGCTCGACACGTTGTCCGGGTTCCCACCATAAACAGCCAAGTATCGGATCGGCGCCGTCGGCTCCAGGCTGTCCAATCGGCGTGCTCGACGCGGCTGCTTGTTCAAGCTGCGACACTCGGTCCGAGAATCCCGAATCTACCATCCAAGCAGAGCGGTCAACCAAGCGGCTCCGACCCTCCGCTGCCTCCGATGTACAGCCGCCGCAAATAGAAATAGCCGGAGAATTCAAGGAGCCGCCTATTGAATTATTCCCTCCACCATATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

331

Amino Acids

35.64

Weight (kDa)

7.61

Isoelectric Point (pI)

72.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 36 - 105 1.7e-11 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 731
AccB1I GGYRCC 3 cut(s) 389, 682, 775
AccB7I CCANNNNNTGG 2 cut(s) 216, 449
AccBSI CCGCTC 2 cut(s) 61, 877
AccII CGCG 4 cut(s) 174, 355, 698, 815
AclWI GGATC 4 cut(s) 214, 227, 484, 778
AcoI YGGCCR 2 cut(s) 331, 618
AcsI RAATTY 1 cut(s) 947
AcyI GRCGYC 3 cut(s) 390, 683, 776
AfaI GTAC 3 cut(s) 181, 721, 918
AfiI CCNNNNNNNGG 5 cut(s) 216, 449, 464, 645, 767
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 3 cut(s) 828, 952, 968
AhdI GACNNNNNGTC 2 cut(s) 735, 841
AjnI CCWGG 3 cut(s) 201, 409, 787
AluBI AGCT 3 cut(s) 342, 455, 831
AluI AGCT 3 cut(s) 342, 455, 831
Alw21I GWGCWC 3 cut(s) 457, 630, 810
Alw26I GTCTC 2 cut(s) 122, 530
AlwI GGATC 4 cut(s) 214, 227, 484, 778
AlwNI CAGNNNCTG 1 cut(s) 345
AoxI GGCC 2 cut(s) 331, 618
ApeKI GCWGC 4 cut(s) 342, 818, 831, 905
ApoI RAATTY 1 cut(s) 947
AspLEI GCGC 4 cut(s) 392, 635, 685, 778
AspS9I GGNCC 3 cut(s) 413, 440, 843
AsuC2I CCSGG 3 cut(s) 166, 459, 741
AsuHPI GGTGA 5 cut(s) 20, 103, 250, 488, 665
AvaII GGWCC 3 cut(s) 413, 440, 843
BamHI GGATCC 1 cut(s) 219
BanI GGYRCC 3 cut(s) 389, 682, 775
BanII GRGCYC 3 cut(s) 135, 433, 457
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 3 cut(s) 457, 630, 810
BbvI GCAGC 4 cut(s) 329, 805, 818, 892
BccI CCATC 7 cut(s) 88, 218, 443, 501, 610, 659, 872
BceAI ACGGC 3 cut(s) 318, 670, 763
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BciT130I CCWGG 3 cut(s) 203, 411, 789
BcnI CCSGG 3 cut(s) 166, 459, 741
BcoDI GTCTC 2 cut(s) 122, 530
BfoI RGCGCY 3 cut(s) 393, 686, 779
BfuAI ACCTGC 1 cut(s) 731
Bme1390I CCNGG 6 cut(s) 166, 203, 411, 459, 741, 789
Bme18I GGWCC 3 cut(s) 413, 440, 843
BmeRI GACNNNNNGTC 2 cut(s) 735, 841
BmgT120I GGNCC 3 cut(s) 413, 440, 843
BmrFI CCNGG 6 cut(s) 166, 203, 411, 459, 741, 789
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 771
BpuMI CCSGG 3 cut(s) 166, 459, 741
BsaBI GATNNNNATC 2 cut(s) 188, 669
BsaHI GRCGYC 3 cut(s) 390, 683, 776
BsaJI CCNNGG 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 449, 464, 645, 767
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 221
Bse8I GATNNNNATC 2 cut(s) 188, 669
BseBI CCWGG 3 cut(s) 203, 411, 789
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 4 cut(s) 406, 454, 670, 864
BseJI GATNNNNATC 2 cut(s) 188, 669
BseLI CCNNNNNNNGG 5 cut(s) 216, 449, 464, 645, 767
BseMII CTCAG 2 cut(s) 120, 574
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 6 cut(s) 42, 45, 289, 539, 546, 557
BseX3I CGGCCG 1 cut(s) 618
BseXI GCAGC 4 cut(s) 329, 805, 818, 892
Bsh1236I CGCG 4 cut(s) 174, 355, 698, 815
Bsh1285I CGRYCG 3 cut(s) 186, 289, 621
BshFI GGCC 2 cut(s) 333, 620
BshNI GGYRCC 3 cut(s) 389, 682, 775
BsiEI CGRYCG 3 cut(s) 186, 289, 621
BsiHKAI GWGCWC 3 cut(s) 457, 630, 810
BsiSI CCGG 5 cut(s) 166, 458, 639, 740, 942
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 5 cut(s) 216, 449, 464, 645, 767
BsmAI GTCTC 2 cut(s) 122, 530
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 333, 620
Bsp1286I GDGCHC 5 cut(s) 135, 433, 457, 630, 810
Bsp1407I TGTACA 1 cut(s) 916
Bsp143I GATC 5 cut(s) 183, 219, 489, 670, 770
BspANI GGCC 2 cut(s) 333, 620
BspCNI CTCAG 2 cut(s) 121, 573
BspFNI CGCG 4 cut(s) 174, 355, 698, 815
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 4 cut(s) 214, 227, 484, 778
BspT107I GGYRCC 3 cut(s) 389, 682, 775
BsrBI CCGCTC 2 cut(s) 61, 877
BsrFI RCCGGY 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 916
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 5 cut(s) 183, 219, 489, 670, 770
BssNI GRCGYC 3 cut(s) 390, 683, 776
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 3 cut(s) 203, 411, 789
Bst4CI ACNGT 3 cut(s) 179, 440, 703
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 3 cut(s) 390, 683, 776
BstAUI TGTACA 1 cut(s) 916
BstC8I GCNNGC 2 cut(s) 199, 806
BstDEI CTNAG 2 cut(s) 129, 560
BstF5I GGATG 4 cut(s) 406, 454, 670, 864
BstFNI CGCG 4 cut(s) 174, 355, 698, 815
BstH2I RGCGCY 3 cut(s) 393, 686, 779
BstHHI GCGC 4 cut(s) 392, 635, 685, 778
BstKTI GATC 5 cut(s) 186, 222, 492, 673, 773
BstMAI GTCTC 2 cut(s) 122, 530
BstMBI GATC 5 cut(s) 183, 219, 489, 670, 770
BstMCI CGRYCG 3 cut(s) 186, 289, 621
BstMWI GCNNNNNNNGC 4 cut(s) 339, 452, 620, 782
BstNI CCWGG 3 cut(s) 203, 411, 789
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 6 cut(s) 164, 201, 409, 457, 739, 787
BstUI CGCG 4 cut(s) 174, 355, 698, 815
BstV1I GCAGC 4 cut(s) 329, 805, 818, 892
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 618
BsuRI GGCC 2 cut(s) 333, 620
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 4 cut(s) 406, 454, 670, 864
BtsIMutI CAGTG 1 cut(s) 708
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 2 cut(s) 199, 806
CaiI CAGNNNCTG 1 cut(s) 345
CciNI GCGGCCGC 1 cut(s) 618
CfoI GCGC 4 cut(s) 392, 635, 685, 778
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 3 cut(s) 413, 440, 843
CpoI CGGWCCG 1 cut(s) 843
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 180, 720, 917
CspI CGGWCCG 1 cut(s) 843
CviAII CATG 3 cut(s) 142, 464, 577
CviQI GTAC 3 cut(s) 180, 720, 917
DdeI CTNAG 2 cut(s) 129, 560
DinI GGCGCC 3 cut(s) 391, 684, 777
DpnI GATC 5 cut(s) 185, 221, 491, 672, 772
DpnII GATC 5 cut(s) 183, 219, 489, 670, 770
DriI GACNNNNNGTC 2 cut(s) 735, 841
EaeI YGGCCR 2 cut(s) 331, 618
EagI CGGCCG 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 2 cut(s) 735, 841
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 455
EclXI CGGCCG 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 676
Eco24I GRGCYC 3 cut(s) 135, 433, 457
Eco47I GGWCC 3 cut(s) 413, 440, 843
Eco52I CGGCCG 1 cut(s) 618
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 3 cut(s) 201, 409, 787
EcoT14I CCWWGG 1 cut(s) 676
EcoT38I GRGCYC 3 cut(s) 135, 433, 457
EgeI GGCGCC 3 cut(s) 391, 684, 777
EheI GGCGCC 3 cut(s) 391, 684, 777
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 3 cut(s) 145, 467, 580
FaiI YATR 6 cut(s) 143, 320, 465, 578, 753, 985
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 141, 463, 576
FauI CCCGC 2 cut(s) 206, 316
FokI GGATG 4 cut(s) 393, 461, 677, 851
FriOI GRGCYC 3 cut(s) 135, 433, 457
GlaI GCGC 4 cut(s) 391, 634, 684, 777
GsuI CTGGAG 1 cut(s) 771
HaeII RGCGCY 3 cut(s) 393, 686, 779
HaeIII GGCC 2 cut(s) 333, 620
HapII CCGG 5 cut(s) 166, 458, 639, 740, 942
HgaI GACGC 1 cut(s) 821
HhaI GCGC 4 cut(s) 392, 635, 685, 778
Hin1I GRCGYC 3 cut(s) 390, 683, 776
Hin1II CATG 3 cut(s) 145, 467, 580
Hin6I GCGC 4 cut(s) 390, 633, 683, 776
HinP1I GCGC 4 cut(s) 390, 633, 683, 776
HincII GTYRAC 2 cut(s) 277, 882
HindII GTYRAC 2 cut(s) 277, 882
HinfI GANTC 5 cut(s) 125, 206, 470, 850, 857
HpaII CCGG 5 cut(s) 166, 458, 639, 740, 942
HphI GGTGA 5 cut(s) 20, 103, 250, 488, 665
Hpy166II GTNNAC 4 cut(s) 232, 277, 706, 882
Hpy188I TCNGA 8 cut(s) 85, 130, 489, 572, 770, 847, 896, 913
Hpy188III TCNNGA 1 cut(s) 854
Hpy8I GTNNAC 4 cut(s) 232, 277, 706, 882
Hpy99I CGWCG 4 cut(s) 355, 610, 784, 815
HpyAV CCTTC 2 cut(s) 274, 512
HpyCH4III ACNGT 3 cut(s) 179, 440, 703
HpyCH4IV ACGT 2 cut(s) 397, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 339, 452, 620, 782
HpyF3I CTNAG 2 cut(s) 129, 560
HpySE526I ACGT 2 cut(s) 397, 733
Hsp92I GRCGYC 3 cut(s) 390, 683, 776
Hsp92II CATG 3 cut(s) 145, 467, 580
HspAI GCGC 4 cut(s) 390, 633, 683, 776
KasI GGCGCC 3 cut(s) 389, 682, 775
Kzo9I GATC 5 cut(s) 183, 219, 489, 670, 770
LmnI GCTCC 7 cut(s) 66, 452, 460, 490, 790, 897, 955
Lsp1109I GCAGC 4 cut(s) 329, 805, 818, 892
MaeII ACGT 2 cut(s) 397, 733
MalI GATC 5 cut(s) 185, 221, 491, 672, 772
MbiI CCGCTC 2 cut(s) 61, 877
MboI GATC 5 cut(s) 183, 219, 489, 670, 770
MboII GAAGA 4 cut(s) 32, 38, 286, 416
MfeI CAATTG 1 cut(s) 476
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 5 cut(s) 135, 433, 457, 630, 810
MluCI AATT 3 cut(s) 476, 947, 968
Mly113I GGCGCC 3 cut(s) 390, 683, 776
MlyI GAGTC 2 cut(s) 119, 200
MmeI TCCRAC 2 cut(s) 553, 919
MseI TTAA 2 cut(s) 644, 991
MspA1I CMGCKG 4 cut(s) 342, 446, 623, 905
MspI CCGG 5 cut(s) 166, 458, 639, 740, 942
MspR9I CCNGG 6 cut(s) 166, 203, 411, 459, 741, 789
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 3 cut(s) 203, 411, 789
MvnI CGCG 4 cut(s) 174, 355, 698, 815
MwoI GCNNNNNNNGC 4 cut(s) 339, 452, 620, 782
NarI GGCGCC 3 cut(s) 390, 683, 776
NciI CCSGG 3 cut(s) 166, 459, 741
NdeII GATC 5 cut(s) 183, 219, 489, 670, 770
NlaIII CATG 3 cut(s) 145, 467, 580
NotI GCGGCCGC 1 cut(s) 618
NspI RCATGY 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PfeI GAWTC 3 cut(s) 470, 850, 857
PflMI CCANNNNNTGG 2 cut(s) 216, 449
PfoI TCCNGGA 1 cut(s) 409
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 2 cut(s) 119, 200
PluTI GGCGCC 3 cut(s) 393, 686, 779
PpsI GAGTC 2 cut(s) 119, 200
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 201, 409, 787
PspGI CCWGG 3 cut(s) 201, 409, 787
PspPI GGNCC 3 cut(s) 413, 440, 843
PstNI CAGNNNCTG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 219
PvuI CGATCG 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 342
RsaI GTAC 3 cut(s) 181, 721, 918
RsaNI GTAC 3 cut(s) 180, 720, 917
Rsr2I CGGWCCG 1 cut(s) 843
RsrII CGGWCCG 1 cut(s) 843
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 644, 991
Sau3AI GATC 5 cut(s) 183, 219, 489, 670, 770
Sau96I GGNCC 3 cut(s) 413, 440, 843
SchI GAGTC 2 cut(s) 119, 200
ScrFI CCNGG 6 cut(s) 166, 203, 411, 459, 741, 789
SduI GDGCHC 5 cut(s) 135, 433, 457, 630, 810
SfoI GGCGCC 3 cut(s) 391, 684, 777
SinI GGWCC 3 cut(s) 413, 440, 843
Sse9I AATT 3 cut(s) 476, 947, 968
SspDI GGCGCC 3 cut(s) 389, 682, 775
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 6 cut(s) 164, 201, 409, 457, 739, 787
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 179, 440, 703
TaiI ACGT 2 cut(s) 400, 736
TaqI TCGA 8 cut(s) 123, 186, 285, 427, 505, 605, 728, 810
TaqII GACCGA 1 cut(s) 831
TasI AATT 3 cut(s) 476, 947, 968
TatI WGTACW 1 cut(s) 916
TfiI GAWTC 3 cut(s) 470, 850, 857
Tru1I TTAA 2 cut(s) 644, 991
Tru9I TTAA 2 cut(s) 644, 991
TscAI CASTG 1 cut(s) 708
TseI GCWGC 4 cut(s) 342, 818, 831, 905
TspDTI ATGAA 2 cut(s) 102, 395
TspGWI ACGGA 2 cut(s) 262, 339
TspRI CASTG 1 cut(s) 708
Van91I CCANNNNNTGG 2 cut(s) 216, 449
VpaK11BI GGWCC 3 cut(s) 413, 440, 843
XapI RAATTY 1 cut(s) 947
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.