pycom05g11430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
15018499 .. 15018739
241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGTCAATGGGACCTAGACCTGACCGGCCGGAGTTCGAACTCGACTCCTCCGCCGTCGTCGATTTTCCTCAACCAAAAATGGAGCTCAACAACATCAAGAGGCAGCAGAGCCGGCGTGCACCAGGGCTGATGTTCCCAGTCACCGAGGGAACCACTCGGGCAAGCTGGTTGCTGTTGTTGGGAACAACGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.2

Weight (kDa)

8.34

Isoelectric Point (pI)

83.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 26
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 85, 165
AluI AGCT 2 cut(s) 85, 165
Alw21I GWGCWC 2 cut(s) 87, 121
Alw44I GTGCAC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 26
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 87, 121
BbvI GCAGC 1 cut(s) 115
BceAI ACGGC 2 cut(s) 38, 175
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 12, 151
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 122, 144
Bse118I RCCGGY 2 cut(s) 24, 111
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 122, 144
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 121
BseX3I CGGCCG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 87, 121
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 3 cut(s) 25, 29, 112
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 87, 121
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 12, 151
BspT104I TTCGAA 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 24, 111
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 2 cut(s) 24, 111
BssECI CCNNGG 2 cut(s) 122, 144
Bst2UI CCWGG 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 113, 117, 163
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 115
BstZI CGGCCG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 113, 117, 163
Cfr10I RCCGGY 2 cut(s) 24, 111
Cfr13I GGNCC 1 cut(s) 11
CviJI RGCY 5 cut(s) 28, 85, 111, 127, 165
CviKI_1 RGCY 5 cut(s) 28, 85, 111, 127, 165
EaeI YGGCCR 1 cut(s) 26
EagI CGGCCG 1 cut(s) 26
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 87
FaqI GGGAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 28
HapII CCGG 3 cut(s) 25, 29, 112
HinfI GANTC 1 cut(s) 44
HpaII CCGG 3 cut(s) 25, 29, 112
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 2 cut(s) 59, 62
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 8 cut(s) 33, 38, 42, 108, 125, 135, 150, 151
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 87, 121
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 4 cut(s) 58, 78, 93, 139
MroNI GCCGGC 1 cut(s) 111
MspI CCGG 3 cut(s) 25, 29, 112
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 112
NaeI GCCGGC 1 cut(s) 113
NgoMIV GCCGGC 1 cut(s) 111
NlaIV GGNNCC 2 cut(s) 12, 151
NmuCI GTSAC 1 cut(s) 139
NspV TTCGAA 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PpuMI RGGWCCY 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 12, 151
PspPI GGNCC 1 cut(s) 11
PspPPI RGGWCCY 1 cut(s) 11
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 2 cut(s) 87, 121
SetI ASST 4 cut(s) 16, 22, 87, 167
SfuI TTCGAA 1 cut(s) 36
SinI GGWCC 1 cut(s) 11
SsiI CCGC 1 cut(s) 51
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 121
TaqI TCGA 3 cut(s) 36, 42, 60
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 139
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 11
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.