pycom05g11440
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014893
Physical Location & Seq
Reverse (-)
15022359 .. 15023499
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
ATGCAAATACAAAAAACAAGGCTTTCCATTTTTTCCACCACCACTTCATCCGTCGCAAAAACCAAAAAACCAGACATAAACCAACAAACGAAGGCAACGGCTTTTTGGCCACAACTAATTATTCTTCTGAAAGCTTTCAACTTTTTTCCATTTATTTTTTCAAATGGGAAGATCGATCCTTGCTGCGAGAAGGCTCACACCAACAAAGGAGCTTGGACCAAGGAAGAAGACGACCGCCTCACTGCCTACATCAGAGCTCACGGCGAAGGCTGCTGGCGTTCGCTGCCTAAGGCGGCGGGCCTCCTTCGATGTGGGAAGAGCTGCAGGCTGCGGTGGATCAACTACCTTAGACCTGATCTCAAGCGTGGCAATTTCACGGAAGAAGAAGATGAGCTCATCATCAAACTCCATAGCCTCCTCGGAAACAAATGGTCTTTGATAGCTGGAAGGCTGCCTGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCACATAAGAAGGAAGCTTTTGACCAGAGGGATTGACCCCACAACTCACAGGCCACTCAATGAGACTCCTCAGGAATCTGCAACCACAATTTCTTTTGCTGCTGCTTCTGCAAATATCAAAGAAGATGATGAAAAAATCTCCATAACCAATGGGCTTGTTCGCAAGCATTCAACAAACCCAGTTCAGGAAAGGTGCCCTGACTTGAATCTTGAGCTTCAAATCAGCCCTCCCTGCCAGCCTCAGCAACGCAGTGAGAGTTTGAAGAGTGGAGGGAGAGGACTCTGTTTTTCTTGCAGTTTGGGGATTCAAGATGCAAAGAATTGCAGCTGTGGGAGGGATGCTTTTGGTGGAACCACCAGTGGCACTGCCAAAATTGGATATGATTTCTTGGGGCTGAAAAATGGGGTCTTGGATTACAGAAGCTTGGAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

311

Amino Acids

34.76

Weight (kDa)

9.34

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 69 - 116 6.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 130 3.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 122 - 166 3e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 125 - 170 1.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 687
AciI CCGC 4 cut(s) 235, 293, 296, 331
AclWI GGATC 2 cut(s) 170, 344
AcoI YGGCCR 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 679
AgsI TTSAA 7 cut(s) 139, 162, 666, 700, 713, 757, 803
AjnI CCWGG 1 cut(s) 454
Alw21I GWGCWC 2 cut(s) 259, 396
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 2 cut(s) 170, 344
AoxI GGCC 3 cut(s) 107, 298, 545
ApeKI GCWGC 9 cut(s) 183, 270, 283, 321, 328, 451, 593, 596, 819
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 216, 298
AvaII GGWCC 1 cut(s) 216
AxyI CCTNAGG 2 cut(s) 288, 564
BaeGI GKGCMC 1 cut(s) 692
BalI TGGCCA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 2 cut(s) 259, 396
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 259, 396
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 9 cut(s) 170, 257, 270, 308, 315, 438, 580, 583, 831
BceAI ACGGC 2 cut(s) 114, 277
BciT130I CCWGG 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 216, 298
BmiI GGNNCC 2 cut(s) 689, 847
BmrFI CCNGG 1 cut(s) 456
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 2 cut(s) 796, 823
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 344, 725
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 219, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 679
Bse1I ACTGG 3 cut(s) 491, 674, 852
Bse21I CCTNAGG 2 cut(s) 288, 564
BseBI CCWGG 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 219, 418
BseGI GGATG 2 cut(s) 47, 838
BseLI CCNNNNNNNGG 1 cut(s) 679
BseMII CTCAG 2 cut(s) 578, 749
BseNI ACTGG 3 cut(s) 491, 674, 852
BseRI GAGGAG 2 cut(s) 407, 552
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 9 cut(s) 170, 257, 270, 308, 315, 438, 580, 583, 831
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 3 cut(s) 109, 300, 547
BshNI GGYRCC 1 cut(s) 687
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 259, 396
BslI CCNNNNNNNGG 1 cut(s) 679
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 3 cut(s) 109, 300, 547
Bsp1286I GDGCHC 3 cut(s) 259, 396, 692
Bsp143I GATC 4 cut(s) 171, 175, 336, 355
BspACI CCGC 4 cut(s) 235, 293, 296, 331
BspANI GGCC 3 cut(s) 109, 300, 547
BspCNI CTCAG 2 cut(s) 577, 748
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 689, 847
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 2 cut(s) 170, 344
BspQI GCTCTTC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 687
BsrI ACTGG 3 cut(s) 491, 674, 852
BssECI CCNNGG 2 cut(s) 219, 418
BssMI GATC 4 cut(s) 171, 175, 336, 355
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 456
Bst6I CTCTTC 2 cut(s) 311, 752
BstC8I GCNNGC 5 cut(s) 275, 298, 326, 659, 731
BstDEI CTNAG 4 cut(s) 288, 347, 564, 735
BstF5I GGATG 2 cut(s) 47, 838
BstKTI GATC 4 cut(s) 174, 178, 339, 358
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 4 cut(s) 171, 175, 336, 355
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 270, 283, 602, 726
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 692
BstV1I GCAGC 9 cut(s) 170, 257, 270, 308, 315, 438, 580, 583, 831
BstV2I GAAGAC 1 cut(s) 234
Bsu15I ATCGAT 1 cut(s) 174
Bsu36I CCTNAGG 2 cut(s) 288, 564
BsuRI GGCC 3 cut(s) 109, 300, 547
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 2 cut(s) 47, 838
BtsI GCAGTG 3 cut(s) 240, 751, 858
BtsIMutI CAGTG 4 cut(s) 240, 751, 858, 859
Cac8I GCNNGC 5 cut(s) 275, 298, 326, 659, 731
Cfr13I GGNCC 2 cut(s) 216, 298
ClaI ATCGAT 1 cut(s) 174
DdeI CTNAG 4 cut(s) 288, 347, 564, 735
DpnI GATC 4 cut(s) 173, 177, 338, 357
DpnII GATC 4 cut(s) 171, 175, 336, 355
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 2 cut(s) 311, 752
EarI CTCTTC 2 cut(s) 311, 752
Ecl136II GAGCTC 2 cut(s) 257, 394
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 259, 396
Eco47I GGWCC 1 cut(s) 216
Eco53kI GAGCTC 2 cut(s) 257, 394
Eco81I CCTNAGG 2 cut(s) 288, 564
EcoICRI GAGCTC 2 cut(s) 257, 394
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 259, 396
ErhI CCWWGG 1 cut(s) 219
FaiI YATR 5 cut(s) 77, 411, 500, 638, 876
FauI CCCGC 1 cut(s) 289
FokI GGATG 2 cut(s) 34, 845
FriOI GRGCYC 2 cut(s) 259, 396
HaeIII GGCC 3 cut(s) 109, 300, 547
HindIII AAGCTT 3 cut(s) 132, 509, 916
HinfI GANTC 5 cut(s) 559, 569, 700, 774, 799
Hpy188I TCNGA 3 cut(s) 129, 254, 422
Hpy188III TCNNGA 4 cut(s) 566, 680, 704, 803
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 85, 184, 260, 314, 441, 498
HpyCH4V TGCA 7 cut(s) 4, 324, 575, 605, 789, 809, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 283, 602, 726
HpyF3I CTNAG 4 cut(s) 288, 347, 564, 735
Kzo9I GATC 4 cut(s) 171, 175, 336, 355
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 9 cut(s) 170, 257, 270, 308, 315, 438, 580, 583, 831
LweI GCATC 2 cut(s) 796, 823
MalI GATC 4 cut(s) 173, 177, 338, 357
MboI GATC 4 cut(s) 171, 175, 336, 355
MhlI GDGCHC 3 cut(s) 259, 396, 692
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 5 cut(s) 117, 370, 582, 814, 867
MluNI TGGCCA 1 cut(s) 109
MlyI GAGTC 2 cut(s) 553, 768
Mox20I TGGCCA 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 109
Msp20I TGGCCA 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 822
MspR9I CCNGG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 270, 283, 602, 726
NdeII GATC 4 cut(s) 171, 175, 336, 355
NlaIV GGNNCC 2 cut(s) 689, 847
PciSI GCTCTTC 1 cut(s) 311
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 569, 700, 799
PleI GAGTC 2 cut(s) 553, 768
PpsI GAGTC 2 cut(s) 553, 768
Psp124BI GAGCTC 2 cut(s) 259, 396
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 689, 847
PspPI GGNCC 2 cut(s) 216, 298
PstI CTGCAG 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 822
SacI GAGCTC 2 cut(s) 259, 396
SapI GCTCTTC 1 cut(s) 311
Sau3AI GATC 4 cut(s) 171, 175, 336, 355
Sau96I GGNCC 2 cut(s) 216, 298
SchI GAGTC 2 cut(s) 553, 768
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 3 cut(s) 259, 396, 692
SfaNI GCATC 2 cut(s) 796, 823
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 359, 704
SmoI CTYRAG 2 cut(s) 359, 704
Sse9I AATT 5 cut(s) 117, 370, 582, 814, 867
SsiI CCGC 4 cut(s) 235, 293, 296, 331
SstI GAGCTC 2 cut(s) 259, 396
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 174, 307
TasI AATT 5 cut(s) 117, 370, 582, 814, 867
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 3 cut(s) 569, 700, 799
TscAI CASTG 4 cut(s) 247, 751, 859, 865
TseI GCWGC 9 cut(s) 183, 270, 283, 321, 328, 451, 593, 596, 819
TspDTI ATGAA 2 cut(s) 36, 639
TspGWI ACGGA 2 cut(s) 40, 392
TspRI CASTG 4 cut(s) 247, 751, 859, 865
VpaK11BI GGWCC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.