Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15313522 .. 15314913

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATCTCTACCTTTGCTTCATCTGCTTCCTCGTTTCTTCTTTCGTCCTCGTCGCGTTTTTCTTACTGACATGTGCAGGCACAAGAGGTGGCATGAACATGATGATGACCCTGCCAAGCCTCAGACAGATGCGTGGATCTCTAGTGCGTTTGAAAAGTTGGAAACTGAGTGAAGACCAAAGGAATGAAAAAGTACCTCAATCAAACTTTGAAGCTGAAAGGAAGAGAAGGAATAAGCTTAACGACGTATTCCATATCCTTCGCACTTTGCTTCCCAACAATACTGGGATGGACAGAGCTTCCGTCATCGGGGACACAATTGCTTACGTGTCAAAGTTGCAGAGGCAAGTAAAAGAACTTGCTGGAGAGCTTGAACTTAACTCAAATGGTGGAGCAAAGGAAACTAGTTATATTTGTGGAAACAATGGCAATTTACAATCAGAGTTTCTCCGTCAAATGGAAACTATCATTGCAAACACACCGGAAAATGAAAAGATGGAGCCACAAGTGGAAGTAACTGAGTTGGATGTTAATGAATTCTCCGTGACTGTATTATGTGAGCACAAGCCAGGAGGGTTTGTGAGACTGATGGAGGCATTGGATACTTTAGGCTTGGAAGTAACCTATGCAAATGTGACTAGCTTCAAAACCCTGATCTTTAATGTCTTTAAAGTACAGAAAAATGACAGTACCGGTAAAATAGTTCAAGCTGATCATGTTAAGGACTCTTTGCTGGAGATAACTCGGAAACTGTCAATGGAATCCATCATAAGGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

261

Amino Acids

29.36

Weight (kDa)

6.85

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AclWI	GGATC	2 cut(s)	12, 145
AcsI	RAATTY	1 cut(s)	536
AfaI	GTAC	3 cut(s)	195, 675, 691
AfiI	CCNNNNNNNGG	3 cut(s)	309, 457, 771
AflIII	ACRYGT	2 cut(s)	71, 327
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	5 cut(s)	154, 212, 374, 646, 707
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	6 cut(s)	215, 238, 299, 370, 642, 710
AluI	AGCT	6 cut(s)	215, 238, 299, 370, 642, 710
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	2 cut(s)	12, 145
AoxI	GGCC	1 cut(s)	777
ApoI	RAATTY	1 cut(s)	536
AsiGI	ACCGGT	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	564
BccI	CCATC	4 cut(s)	283, 490, 583, 773
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	1 cut(s)	577
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	3 cut(s)	143, 405, 639
BfuI	GTATCC	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	2 cut(s)	384, 755
BsaAI	YACGTR	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	481, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 457, 771
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	3 cut(s)	289, 3224, 5529
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	294, 532
BseLI	CCNNNNNNNGG	3 cut(s)	309, 457, 771
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	3 cut(s)	136, 158, 510
BseNI	ACTGG	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	779
BshTI	ACCGGT	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	482, 693
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	309, 457, 771
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	4, 137, 654, 712
BspANI	GGCC	1 cut(s)	779
BspCNI	CTCAG	3 cut(s)	135, 159, 511
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	2 cut(s)	12, 145
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	692
BssMI	GATC	4 cut(s)	4, 137, 654, 712
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	550, 689, 753
Bst6I	CTCTTC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	122, 167, 519
BstF5I	GGATG	2 cut(s)	294, 532
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	7, 140, 657, 715
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	4, 137, 654, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	568
BstUI	CGCG	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	4, 137
BstYI	RGATCY	2 cut(s)	4, 137
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	779
BtsCI	GGATG	2 cut(s)	294, 532
Cac8I	GCNNGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	194, 674, 690
CspAI	ACCGGT	1 cut(s)	692
CviAII	CATG	4 cut(s)	72, 94, 100, 716
CviQI	GTAC	3 cut(s)	194, 674, 690
DdeI	CTNAG	3 cut(s)	122, 167, 519
DpnI	GATC	4 cut(s)	6, 139, 656, 714
DpnII	GATC	4 cut(s)	4, 137, 654, 712
DraI	TTTAAA	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	568
FaeI	CATG	4 cut(s)	75, 97, 103, 719
FaiI	YATR	9 cut(s)	73, 95, 101, 255, 411, 556, 627, 717, 770
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	4 cut(s)	71, 93, 99, 715
FbaI	TGATCA	1 cut(s)	712
FokI	GGATG	2 cut(s)	301, 539
FspBI	CTAG	3 cut(s)	143, 405, 639
GsuI	CTGGAG	2 cut(s)	384, 755
HaeIII	GGCC	1 cut(s)	779
HapII	CCGG	2 cut(s)	482, 693
Hin1II	CATG	4 cut(s)	75, 97, 103, 719
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	725, 761
HpaII	CCGG	2 cut(s)	482, 693
Hpy188I	TCNGA	3 cut(s)	125, 442, 747
Hpy99I	CGWCG	2 cut(s)	56, 248
HpyAV	CCTTC	2 cut(s)	222, 269
HpyCH4III	ACNGT	3 cut(s)	550, 689, 753
HpyCH4IV	ACGT	2 cut(s)	246, 327
HpyCH4V	TGCA	4 cut(s)	77, 340, 473, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	122, 167, 519
HpySE526I	ACGT	2 cut(s)	246, 327
Hsp92II	CATG	4 cut(s)	75, 97, 103, 719
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	4, 137, 654, 712
LmnI	GCTCC	2 cut(s)	392, 499
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	143, 405, 639
MaeII	ACGT	2 cut(s)	246, 327
MaeIII	GTNAC	4 cut(s)	514, 544, 619, 634
MalI	GATC	4 cut(s)	6, 139, 656, 714
MboI	GATC	4 cut(s)	4, 137, 654, 712
MboII	GAAGA	3 cut(s)	30, 185, 235
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	2 cut(s)	4, 137
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	3 cut(s)	318, 430, 536
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	2 cut(s)	140, 504
MnlI	CCTC	8 cut(s)	41, 59, 80, 131, 207, 336, 566, 586
MseI	TTAA	6 cut(s)	240, 378, 531, 660, 669, 720
MslI	CAYNNNNRTG	3 cut(s)	98, 104, 773
MspI	CCGG	2 cut(s)	482, 693
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	4 cut(s)	4, 137, 654, 712
NlaIII	CATG	4 cut(s)	75, 97, 103, 719
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	2 cut(s)	544, 634
NspI	RCATGY	1 cut(s)	75
PciI	ACATGT	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	761
PinAI	ACCGGT	1 cut(s)	692
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Ppu21I	YACGTR	1 cut(s)	328
PscI	ACATGT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	501
PsuI	RGATCY	2 cut(s)	4, 137
RsaI	GTAC	3 cut(s)	195, 675, 691
RsaNI	GTAC	3 cut(s)	194, 674, 690
RseI	CAYNNNNRTG	3 cut(s)	98, 104, 773
SaqAI	TTAA	6 cut(s)	240, 378, 531, 660, 669, 720
Sau3AI	GATC	4 cut(s)	4, 137, 654, 712
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	120
SmiMI	CAYNNNNRTG	3 cut(s)	98, 104, 773
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	3 cut(s)	318, 430, 536
SspMI	CTAG	3 cut(s)	143, 405, 639
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	550, 689, 753
TaiI	ACGT	2 cut(s)	249, 330
TasI	AATT	3 cut(s)	318, 430, 536
TatI	WGTACW	1 cut(s)	673
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	6 cut(s)	240, 378, 531, 660, 669, 720
Tru9I	TTAA	6 cut(s)	240, 378, 531, 660, 669, 720
TseFI	GTSAC	2 cut(s)	544, 634
Tsp45I	GTSAC	2 cut(s)	544, 634
TspDTI	ATGAA	5 cut(s)	10, 110, 201, 504, 549
TspGWI	ACGGA	3 cut(s)	292, 440, 532
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XspI	CTAG	3 cut(s)	143, 405, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.