pycom05g11930

SecE/Sec61-gamma subunits of protein translocation complex

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
15451367 .. 15451759
393 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGCAAGCTGTTCAGGGTTGGTTCATCGTTCCAGTCATGCTAAACTACCGTTTGGAATGAGACAGTATAATGGGGCCAAAATCGATTACTGCAACTCCGTTTCAGTAACATCCACAAGGATTGTAGAGGAGGAAGAGGGGTTCAATAGTTGCGTGCTCGTCGTGTTGGCACCATATGCGCTGCATCTGTGGGAAGGGATCATCGTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.7

Weight (kDa)

5.82

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AclWI GGATC 1 cut(s) 206
AgsI TTSAA 1 cut(s) 145
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 76, 171
BmsI GCATC 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse1I ACTGG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 84
BseGI GGATG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 1 cut(s) 77
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 76, 171
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 33
BssMI GATC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 51, 66
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 7, 155
BstF5I GGATG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 7, 155
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 75
ClaI ATCGAT 1 cut(s) 84
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 1 cut(s) 38
CviJI RGCY 2 cut(s) 9, 77
CviKI_1 RGCY 2 cut(s) 9, 77
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
FaeI CATG 1 cut(s) 41
FaiI YATR 4 cut(s) 39, 69, 175, 177
FatI CATG 1 cut(s) 37
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 182
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
Hpy99I CGWCG 2 cut(s) 164, 209
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 51, 66
HpyCH4V TGCA 2 cut(s) 93, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 159
MnlI CCTC 3 cut(s) 121, 124, 130
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 2 cut(s) 76, 171
PkrI GCNGC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 76, 171
PspPI GGNCC 1 cut(s) 75
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 159
SetI ASST 1 cut(s) 11
SfaNI GCATC 1 cut(s) 193
SgeI CNNG 8 cut(s) 18, 27, 45, 50, 129, 166, 170, 175
TaaI ACNGT 2 cut(s) 51, 66
TaqI TCGA 2 cut(s) 84, 207
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 14
TspGWI ACGGA 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.