Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16953315 .. 16954133

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAGAAAATTCTCTGCGATTTTCGGTTCCTCCTGTTTCTCGCGGCTGCGGCGTTCATCTATATCCAGATACGGCTTTTTGCTACGCAATCGAAGTACGCTGATCGCCTTGCTGATGCGATAGAGTCAGAGAACCAGTGTACATCTCAATTGAGGACTCTTATTGATCAAATAAGCTTGCAACAAGGACAAATTGTTTCCCTTGGGGGTGTGATATATTTCTACCACATGAGTCTTTTAGATGTTTGTTTATACATTATATTGTGCCCAACGATGACATACTTCTTTTATTCCTTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

102

Amino Acids

11.78

Weight (kDa)

6.51

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GNT-I	PF03071	15 - 68	2.2e-09	GNT-I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AciI	CCGC	2 cut(s)	44, 50
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	2 cut(s)	98, 142
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	89
BclI	TGATCA	1 cut(s)	166
BisI	GCNGC	3 cut(s)	45, 48, 51
BlsI	GCNGC	3 cut(s)	46, 49, 52
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	103, 166
BspACI	CCGC	2 cut(s)	44, 50
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	103, 166
BssT1I	CCWWGG	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	2 cut(s)	106, 169
BstMBI	GATC	2 cut(s)	103, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	97, 141
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	3 cut(s)	47, 76, 177
CviKI_1	RGCY	3 cut(s)	47, 76, 177
CviQI	GTAC	2 cut(s)	97, 141
DpnI	GATC	2 cut(s)	105, 168
DpnII	GATC	2 cut(s)	103, 166
Eco130I	CCWWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	232
FaiI	YATR	6 cut(s)	63, 217, 230, 253, 260, 280
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	45, 48, 51
Fsp4HI	GCNGC	3 cut(s)	45, 48, 51
GluI	GCNGC	3 cut(s)	45, 48, 51
Hin1II	CATG	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	3 cut(s)	125, 157, 232
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	103, 166
LpnPI	CCDG	3 cut(s)	47, 80, 149
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	106
MalI	GATC	2 cut(s)	105, 168
MboI	GATC	2 cut(s)	103, 166
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	3 cut(s)	9, 149, 192
MlyI	GAGTC	3 cut(s)	134, 151, 241
MnlI	CCTC	2 cut(s)	41, 147
MseI	TTAA	1 cut(s)	304
MunI	CAATTG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	2 cut(s)	103, 166
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	46, 49, 52
PleI	GAGTC	3 cut(s)	133, 151, 240
PpsI	GAGTC	3 cut(s)	133, 151, 240
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	98, 142
RsaNI	GTAC	2 cut(s)	97, 141
SaqAI	TTAA	1 cut(s)	304
SatI	GCNGC	3 cut(s)	45, 48, 51
Sau3AI	GATC	2 cut(s)	103, 166
SchI	GAGTC	3 cut(s)	134, 151, 241
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	9, 149, 192
SsiI	CCGC	2 cut(s)	44, 50
StyI	CCWWGG	1 cut(s)	202
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	9, 149, 192
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	2 cut(s)	47, 53
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	17, 46
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.