pycom05g13660

At2g17340-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
17159180 .. 17159664
485 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGTCCTTTTTAGCTAGTTGTCAAAACCTTGTCCCTCGACCTTGGGTTATCGATGACTTGGATGCTTTCAAATTAAAATGGACCAAGAAATCTTGGAAAAAGGCTGTTATTTTTGTAGACAATTCTGGTGCTGATATTATTTTGGGTATTTTGCCATTTGCCAGAGAGTTACTCCGGCGTGGGACACAGGTTTGCTGTCAAATCTTGTTTCATTTGTTCAATGCATCTGGTTCTTATGGTACAAACCCCAGAAGTTCTTCTAGTATTCCTTCTTTTTCTAAGAACATTATATGTATTCTTTTGCATGTGTTTGTAAAGTTGGTTCTCCCCGCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

9.75

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 5 - 66 4.5e-13 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AciI CCGC 1 cut(s) 330
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 2 cut(s) 70, 220
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 81
AvaII GGWCC 1 cut(s) 81
BfaI CTAG 2 cut(s) 15, 261
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmsI GCATC 2 cut(s) 52, 233
BplI GAGNNNNNCTC 2 cut(s) 156, 188
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 51
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 2 cut(s) 17, 196
BsmFI GGGAC 2 cut(s) 17, 196
BspACI CCGC 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 81
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 305
CviJI RGCY 2 cut(s) 14, 104
CviKI_1 RGCY 2 cut(s) 14, 104
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 308
FaiI YATR 4 cut(s) 237, 290, 292, 306
FaqI GGGAC 2 cut(s) 17, 196
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 337
FblI GTMKAC 1 cut(s) 117
FokI GGATG 1 cut(s) 74
FspBI CTAG 2 cut(s) 15, 261
HapII CCGG 1 cut(s) 175
Hin1II CATG 1 cut(s) 308
HpaII CCGG 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 224, 304
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 308
LpnPI CCDG 6 cut(s) 111, 173, 175, 188, 213, 262
LweI GCATC 2 cut(s) 52, 233
MaeI CTAG 2 cut(s) 15, 261
MaeIII GTNAC 1 cut(s) 168
MboII GAAGA 1 cut(s) 249
MluCI AATT 2 cut(s) 71, 121
MnlI CCTC 1 cut(s) 45
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 1 cut(s) 74
MspI CCGG 1 cut(s) 175
NlaIII CATG 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 81
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 81
SetI ASST 4 cut(s) 16, 30, 43, 192
SfaNI GCATC 2 cut(s) 52, 233
SinI GGWCC 1 cut(s) 81
Sse9I AATT 2 cut(s) 71, 121
SsiI CCGC 1 cut(s) 330
SspMI CTAG 2 cut(s) 15, 261
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 2 cut(s) 37, 51
TasI AATT 2 cut(s) 71, 121
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 81
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 2 cut(s) 15, 261
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.