Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17321786 .. 17322892

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCCAGGAAATATCGAATTCTTAGATTTAAGGAGAACCGTCATAGAGGAACTGCCTTCGTCAGTTTGGTCTAACGAAAAAATTTCTTCATTGCATATTCAATGGTGTGAAAACCTTAAGTATCTTCCAAGGGGCAGTTGTGAGTTGAAGTTACAGGATTTGCGTTTATGGGGCTGCTCATCTCTTGGCAAGTTTTGGGAGCTTCCTCGGATTATGACAGAGTTAGAGTTGACAGAGACAGCAATAGAAGAACTGCCCTCATCAATTGAGCATCTCTCTTGTCTCAAGAAAATTGATCTGGAAAGTTGCAAAAGGCTCATTCATCTCCCAACGAGCATTTGTAAGTTGAATTCTCTTGAGAGACTTAATCTCACCAGTTGCTCAAAATTTGAATACTTCCCAGAAATATTGGAGCCTATGGAGCACCTAAACTTTCTCTGTTTATCAAAAACCATGATTAAAGAGCTACCCTTGTCGATTAAAAATCTAATTGGGCTTCAGACATTACAGCTCTACCAGTGCAGAAACCTTAAGTCTGTCCCGAATAGCATCTATAACTTAAACTCACTTCAAACTCTCACGTTTGGTGGTTGTTTGAAGCTTAAAATGTTGCCTCCCTTCTTGGTAGGTTTGCTCTCTTTGGAAGAACTGAACCTCAGTTACTGCGGTATATTAGAAATCCCTGATCGCCTCGTTTGCTTAACCTCGTTACGAGATTTGGACCTAAGTGGAACCATGATCCGGAGCATACCTGCAAGCATCAAACAAGCTTCTCAGCTGTCTGTCCTACGCTTAACCAACTGTAAGAGGCTGCAATCTTTACCAGAGCTCCCAGGGGTACTAATTCATGAAAGGCAAGGCAGCTCGCCTCAGAATGCAGCACCGACATTAAGGTCTTCGCTCACACAATTGTGCTACGATGAATATGAATTTTCCCGACGCCATCACGAGCAACTTGGTTTCTGTAATTGCCAAGGAGTTTGTGATGCGTTTGTTGCAAGTGGAAGCAAGATTGTTGGCTCTTATATAAGGCACAAGTGGAACAAGTTCCTCATACATTCAAAAGGGAAAGCAAGAAGCTGCTTTATTCACCTGTTTACAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

369

Amino Acids

41.96

Weight (kDa)

8.48

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	60 - 143	4.1e-08	Leucine-rich repeat region
LRR_RPS2	PF23247	74 - 223	1.8e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_13	PF23286	116 - 277	4.3e-15	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	140 - 219	7.6e-11	Leucine-rich repeat region
LRR_14	PF23598	210 - 281	1.8e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	892
Acc36I	ACCTGC	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	741
AciI	CCGC	1 cut(s)	666
AclWI	GGATC	1 cut(s)	733
AcsI	RAATTY	5 cut(s)	17, 81, 349, 386, 929
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	940
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	1 cut(s)	741
AflII	CTTAAG	2 cut(s)	116, 530
AgsI	TTSAA	7 cut(s)	101, 148, 349, 392, 572, 598, 1062
AjnI	CCWGG	2 cut(s)	4, 832
AleI	CACNNNNGTG	1 cut(s)	910
AluBI	AGCT	9 cut(s)	202, 466, 511, 601, 770, 778, 829, 864, 1080
AluI	AGCT	9 cut(s)	202, 466, 511, 601, 770, 778, 829, 864, 1080
Alw21I	GWGCWC	2 cut(s)	426, 831
Alw26I	GTCTC	3 cut(s)	230, 287, 355
AlwI	GGATC	1 cut(s)	733
AlwNI	CAGNNNCTG	1 cut(s)	663
Aor13HI	TCCGGA	1 cut(s)	741
ApeKI	GCWGC	5 cut(s)	174, 811, 861, 878, 1080
ApoI	RAATTY	5 cut(s)	17, 81, 349, 386, 929
Asp700I	GAANNNNTTC	1 cut(s)	1046
AspS9I	GGNCC	1 cut(s)	721
AsuHPI	GGTGA	2 cut(s)	364, 1082
AvaII	GGWCC	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	831
BauI	CACGAG	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	2 cut(s)	426, 831
BbvI	GCAGC	5 cut(s)	161, 798, 873, 890, 1067
BccI	CCATC	1 cut(s)	951
BciT130I	CCWGG	2 cut(s)	6, 834
BcoDI	GTCTC	3 cut(s)	230, 287, 355
BfrI	CTTAAG	2 cut(s)	116, 530
BfuAI	ACCTGC	1 cut(s)	760
BisI	GCNGC	5 cut(s)	175, 812, 862, 879, 1081
BlsI	GCNGC	5 cut(s)	176, 813, 863, 880, 1082
Bme1390I	CCNGG	2 cut(s)	6, 834
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	2 cut(s)	414, 733
BmrFI	CCNGG	2 cut(s)	6, 834
BmsI	GCATC	4 cut(s)	280, 558, 768, 976
BpiI	GAAGAC	1 cut(s)	888
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpuEI	CTTGAG	2 cut(s)	269, 377
BsaHI	GRCGYC	1 cut(s)	940
BsaJI	CCNNGG	5 cut(s)	128, 206, 832, 833, 973
BsaWI	WCCGGW	1 cut(s)	741
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse1I	ACTGG	2 cut(s)	375, 517
Bse3DI	GCAATG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	6, 834
BseDI	CCNNGG	5 cut(s)	128, 206, 832, 833, 973
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	3 cut(s)	670, 788, 884
BseNI	ACTGG	2 cut(s)	375, 517
BseXI	GCAGC	5 cut(s)	161, 798, 873, 890, 1067
BsgI	GTGCAG	1 cut(s)	541
BsiHKAI	GWGCWC	2 cut(s)	426, 831
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmAI	GTCTC	3 cut(s)	230, 287, 355
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	880
Bsp1286I	GDGCHC	2 cut(s)	426, 831
Bsp13I	TCCGGA	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	295, 685, 738
BspACI	CCGC	1 cut(s)	666
BspCNI	CTCAG	3 cut(s)	669, 787, 883
BspEI	TCCGGA	1 cut(s)	741
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	414, 733
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	1 cut(s)	733
BspTI	CTTAAG	2 cut(s)	116, 530
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	375, 517
BssECI	CCNNGG	5 cut(s)	128, 206, 832, 833, 973
BssMI	GATC	3 cut(s)	295, 685, 738
BssNI	GRCGYC	1 cut(s)	940
BssSI	CACGAG	1 cut(s)	947
BssT1I	CCWWGG	2 cut(s)	128, 973
Bst2BI	CACGAG	1 cut(s)	947
Bst2UI	CCWGG	2 cut(s)	6, 834
Bst4CI	ACNGT	2 cut(s)	40, 803
BstACI	GRCGYC	1 cut(s)	940
BstAFI	CTTAAG	2 cut(s)	116, 530
BstC8I	GCNNGC	2 cut(s)	757, 866
BstDEI	CTNAG	5 cut(s)	22, 656, 725, 774, 870
BstKTI	GATC	3 cut(s)	298, 688, 741
BstMAI	GTCTC	3 cut(s)	230, 287, 355
BstMBI	GATC	3 cut(s)	295, 685, 738
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 696, 995
BstNI	CCWGG	2 cut(s)	6, 834
BstSCI	CCNGG	2 cut(s)	4, 832
BstV1I	GCAGC	5 cut(s)	161, 798, 873, 890, 1067
BstV2I	GAAGAC	1 cut(s)	888
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	757, 866
CaiI	CAGNNNCTG	1 cut(s)	663
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	721
CseI	GACGC	1 cut(s)	948
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	3 cut(s)	454, 736, 848
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	5 cut(s)	22, 656, 725, 774, 870
DpnI	GATC	3 cut(s)	297, 687, 740
DpnII	GATC	3 cut(s)	295, 685, 738
DrdI	GACNNNNNNGTC	1 cut(s)	892
DseDI	GACNNNNNNGTC	1 cut(s)	892
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	128, 973
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	721
Eco53kI	GAGCTC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	829
EcoRI	GAATTC	2 cut(s)	17, 349
EcoRII	CCWGG	2 cut(s)	4, 832
EcoT14I	CCWWGG	2 cut(s)	128, 973
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	2 cut(s)	128, 973
FaeI	CATG	3 cut(s)	457, 739, 851
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	3 cut(s)	453, 735, 847
Fnu4HI	GCNGC	5 cut(s)	175, 812, 862, 879, 1081
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	5 cut(s)	175, 812, 862, 879, 1081
GluI	GCNGC	5 cut(s)	175, 812, 862, 879, 1081
HapII	CCGG	1 cut(s)	742
HgaI	GACGC	1 cut(s)	948
Hin1I	GRCGYC	1 cut(s)	940
Hin1II	CATG	3 cut(s)	457, 739, 851
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	2 cut(s)	599, 768
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	2 cut(s)	364, 1082
Hpy166II	GTNNAC	2 cut(s)	231, 1098
Hpy188I	TCNGA	3 cut(s)	210, 501, 873
Hpy188III	TCNNGA	8 cut(s)	286, 299, 356, 541, 742, 848, 936, 947
Hpy8I	GTNNAC	2 cut(s)	231, 1098
Hpy99I	CGWCG	1 cut(s)	942
HpyAV	CCTTC	2 cut(s)	66, 628
HpyCH4III	ACNGT	2 cut(s)	40, 803
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	7 cut(s)	94, 309, 522, 755, 814, 878, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 696, 995
HpyF3I	CTNAG	5 cut(s)	22, 656, 725, 774, 870
HpySE526I	ACGT	1 cut(s)	581
Hsp92I	GRCGYC	1 cut(s)	940
Hsp92II	CATG	3 cut(s)	457, 739, 851
Kpn2I	TCCGGA	1 cut(s)	741
Kzo9I	GATC	3 cut(s)	295, 685, 738
LmnI	GCTCC	5 cut(s)	199, 412, 421, 744, 834
Lsp1109I	GCAGC	5 cut(s)	161, 798, 873, 890, 1067
LweI	GCATC	4 cut(s)	280, 558, 768, 976
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	3 cut(s)	150, 659, 708
MalI	GATC	3 cut(s)	297, 687, 740
MboI	GATC	3 cut(s)	295, 685, 738
MboII	GAAGA	5 cut(s)	78, 116, 260, 656, 888
MfeI	CAATTG	2 cut(s)	264, 908
MhlI	GDGCHC	2 cut(s)	426, 831
MroI	TCCGGA	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	1046
MslI	CAYNNNNRTG	1 cut(s)	910
MspA1I	CMGCKG	1 cut(s)	778
MspCI	CTTAAG	2 cut(s)	116, 530
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	2 cut(s)	6, 834
MunI	CAATTG	2 cut(s)	264, 908
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	6, 834
MwoI	GCNNNNNNNGC	3 cut(s)	421, 696, 995
NdeII	GATC	3 cut(s)	295, 685, 738
NlaIII	CATG	3 cut(s)	457, 739, 851
NlaIV	GGNNCC	2 cut(s)	414, 733
OliI	CACNNNNGTG	1 cut(s)	910
PagI	TCATGA	1 cut(s)	847
PasI	CCCWGGG	1 cut(s)	833
PctI	GAATGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	1046
PkrI	GCNGC	5 cut(s)	176, 813, 863, 880, 1082
Psp124BI	GAGCTC	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	4, 832
PspGI	CCWGG	2 cut(s)	4, 832
PspN4I	GGNNCC	2 cut(s)	414, 733
PspPI	GGNCC	1 cut(s)	721
PsrI	GAACNNNNNNTAC	2 cut(s)	644, 676
PstNI	CAGNNNCTG	1 cut(s)	663
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
RseI	CAYNNNNRTG	1 cut(s)	910
SacI	GAGCTC	1 cut(s)	831
SatI	GCNGC	5 cut(s)	175, 812, 862, 879, 1081
Sau3AI	GATC	3 cut(s)	295, 685, 738
Sau96I	GGNCC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	6, 834
SduI	GDGCHC	2 cut(s)	426, 831
SfaNI	GCATC	4 cut(s)	280, 558, 768, 976
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	1 cut(s)	910
SmlI	CTYRAG	4 cut(s)	116, 284, 356, 530
SmoI	CTYRAG	4 cut(s)	116, 284, 356, 530
SsiI	CCGC	1 cut(s)	666
SspI	AATATT	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	831
StyD4I	CCNGG	2 cut(s)	4, 832
StyI	CCWWGG	2 cut(s)	128, 973
TaaI	ACNGT	2 cut(s)	40, 803
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	15, 476
TscAI	CASTG	1 cut(s)	524
TseI	GCWGC	5 cut(s)	174, 811, 861, 878, 1080
TspDTI	ATGAA	6 cut(s)	78, 311, 836, 864, 936, 942
TspRI	CASTG	1 cut(s)	524
Vha464I	CTTAAG	2 cut(s)	116, 530
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	5 cut(s)	17, 81, 349, 386, 929
XmnI	GAANNNNTTC	1 cut(s)	1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.