Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17454485 .. 17455234

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGTTGAAAAGGGGTGAGATCATTAGTATAATACATTTTGATGTCTTAATGCAGGCTAGAGTATTCCACTTCACTTCAGAAGTTTCGACACCTCCCTCAATGCGACCGACCTTATTCATGGCAATGTCTTCTTCCAAAAAGTTTGGAGGTCTTGTGTTTTTCGATGTGAATCTGTCGTTGCCTCTGTGGAAATCGCCTGATATAATCAAGTTTTCGAGGCAGGAATTGGAATTCCTTCTTGATGAAGACAACTATGCGAGGAAGAGGAACTACAGGCCCCACTATTATGCTGAGGAGTTTGAGCAAACCAAGAAGCGGAGAGATTATTACCATTACACGCCTGAGGAAATATCTTCGTTATGGCATAAAGGACTTAAGTTCCTGTTTTTGACGGATGGAACTCTTCCAATTCATTACTATTCTCCTTCGTTTCACGGTGTTGTGATTGGAACGGAAGCTGTGCTCATAACCCCATTCACTTGTGATAGAACTGGTTCTAGAGATGCAGTTGTAGCTGCTATCATGCGAAAGCTGACAACTCACCCCGAGATGTATGAAGACCAAGATGTTTTGGAAAGGGAACTTCGATTTGCAGTTGCAGCAGGAATTATATCGCAGTGGACGATCGGTGCTGTTCGAGGTTTTCCGACGGAAAGCGCTACTCAAAATCTGAAGGAGCAGGTTTATGTGCCTTCGATGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

236

Amino Acids

27.3

Weight (kDa)

6.72

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	673
AciI	CCGC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	63, 695
AfeI	AGCGCT	1 cut(s)	661
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	3 cut(s)	461, 518, 535
AluI	AGCT	3 cut(s)	461, 518, 535
Alw21I	GWGCWC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	548
Aor51HI	AGCGCT	1 cut(s)	661
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	518, 602
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	2 cut(s)	237, 496
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	29, 536
AvaI	CYCGRG	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbsI	GAAGAC	3 cut(s)	123, 255, 567
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	505, 614
BccI	CCATC	1 cut(s)	392
BfaI	CTAG	2 cut(s)	60, 501
BfmI	CTRYAG	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	2 cut(s)	519, 603
BlsI	GCNGC	2 cut(s)	520, 604
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	3 cut(s)	123, 255, 567
Bpu10I	CCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	499
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	285, 336
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	505, 614
Bsh1285I	CGRYCG	2 cut(s)	110, 630
BshFI	GGCC	1 cut(s)	280
BsiEI	CGRYCG	2 cut(s)	110, 630
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	318
BsnI	GGCC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	2 cut(s)	21, 627
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	286, 337
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	21, 627
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	260, 411
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	294, 345
BstF5I	GGATG	1 cut(s)	403
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	2 cut(s)	24, 630
BstMBI	GATC	2 cut(s)	21, 627
BstMCI	CGRYCG	2 cut(s)	110, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 602
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	505, 614
BstV2I	GAAGAC	3 cut(s)	123, 255, 567
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	662
Cfr13I	GGNCC	1 cut(s)	279
CviAII	CATG	2 cut(s)	121, 526
CviJI	RGCY	5 cut(s)	59, 280, 461, 518, 535
CviKI_1	RGCY	5 cut(s)	59, 280, 461, 518, 535
DdeI	CTNAG	2 cut(s)	294, 345
DpnI	GATC	2 cut(s)	23, 629
DpnII	GATC	2 cut(s)	21, 627
Eam1104I	CTCTTC	2 cut(s)	260, 411
EarI	CTCTTC	2 cut(s)	260, 411
Eco47III	AGCGCT	1 cut(s)	661
Eco57I	CTGAAG	2 cut(s)	63, 695
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	233
FaeI	CATG	2 cut(s)	124, 529
FatI	CATG	2 cut(s)	120, 525
Fnu4HI	GCNGC	2 cut(s)	519, 603
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	519, 603
FspBI	CTAG	2 cut(s)	60, 501
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	2 cut(s)	519, 603
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	2 cut(s)	124, 529
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HinfI	GANTC	1 cut(s)	172
HphI	GGTGA	2 cut(s)	29, 536
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	3 cut(s)	82, 651, 675
Hpy188III	TCNNGA	2 cut(s)	242, 501
Hpy8I	GTNNAC	1 cut(s)	624
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	4 cut(s)	248, 438, 670, 705
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	55, 509, 596, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 602
HpyF3I	CTNAG	2 cut(s)	294, 345
Hsp92II	CATG	2 cut(s)	124, 529
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	21, 627
LmnI	GCTCC	1 cut(s)	679
LpnPI	CCDG	9 cut(s)	41, 209, 213, 262, 357, 398, 480, 591, 668
Lsp1109I	GCAGC	2 cut(s)	505, 614
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	60, 501
MalI	GATC	2 cut(s)	23, 629
MboI	GATC	2 cut(s)	21, 627
MboII	GAAGA	7 cut(s)	123, 126, 260, 277, 348, 398, 572
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	4 cut(s)	227, 233, 411, 609
MmeI	TCCRAC	1 cut(s)	674
MroXI	GAANNNNTTC	2 cut(s)	237, 496
MseI	TTAA	2 cut(s)	50, 378
MslI	CAYNNNNRTG	3 cut(s)	42, 125, 288
MspCI	CTTAAG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	515, 602
NdeII	GATC	2 cut(s)	21, 627
NlaIII	CATG	2 cut(s)	124, 529
NlaIV	GGNNCC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PdmI	GAANNNNTTC	2 cut(s)	237, 496
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	520, 604
Ple19I	CGATCG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	279
PvuI	CGATCG	1 cut(s)	630
RseI	CAYNNNNRTG	3 cut(s)	42, 125, 288
SaqAI	TTAA	2 cut(s)	50, 378
SatI	GCNGC	2 cut(s)	519, 603
Sau3AI	GATC	2 cut(s)	21, 627
Sau96I	GGNCC	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	8 cut(s)	97, 116, 154, 463, 520, 537, 646, 687
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	3 cut(s)	42, 125, 288
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	4 cut(s)	227, 233, 411, 609
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	2 cut(s)	60, 501
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	6 cut(s)	89, 165, 218, 589, 640, 698
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	4 cut(s)	227, 233, 411, 609
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	50, 378
Tru9I	TTAA	2 cut(s)	50, 378
TscAI	CASTG	1 cut(s)	626
TseI	GCWGC	2 cut(s)	518, 602
TspDTI	ATGAA	4 cut(s)	109, 261, 404, 573
TspGWI	ACGGA	3 cut(s)	410, 470, 668
TspRI	CASTG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	233
XbaI	TCTAGA	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	237, 496
XspI	CTAG	2 cut(s)	60, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.