pycom05g14140
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
17689259 .. 17694306
5048 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGCCGTGCCAGATGCTGCTGAAATACCAAACATGCCACGGCATCAGTCAGAAGTTGCTGCCGAGAGCAGCATGCAGTCAGAAACAAAAGATGCCGAGAGTGATCGATGCAGTCAGGACAGTTCATTGTCGAGCCTACTTGTGTAATCCCCTCTCTCTCTCTAGCTCCACGGTGATGCCCAATGATTCTTCTCTGAATAAACCTGAGGTAAGTATTGTGGATGATTATGTAACTAATGCAAGTACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

84

Amino Acids

9.2

Weight (kDa)

8.69

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 244
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 3 cut(s) 16, 58, 68
AsuHPI GGTGA 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 204
BbvI GCAGC 3 cut(s) 3, 45, 80
BceAI ACGGC 1 cut(s) 55
BfaI CTAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 17, 59, 69
BlsI GCNGC 3 cut(s) 18, 60, 70
BmcAI AGTACT 1 cut(s) 244
BmsI GCATC 5 cut(s) 3, 51, 81, 97, 165
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 37, 168
Bse21I CCTNAGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 37, 168
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 3, 45, 80
BshVI ATCGAT 1 cut(s) 105
Bsp143I GATC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 37, 168
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 121, 172
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 2 cut(s) 37, 168
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstNSI RCATGY 2 cut(s) 36, 75
BstV1I GCAGC 3 cut(s) 3, 45, 80
Bsu15I ATCGAT 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 204
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 2 cut(s) 37, 168
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 243
CviAII CATG 2 cut(s) 33, 72
CviJI RGCY 2 cut(s) 134, 165
CviKI_1 RGCY 2 cut(s) 134, 165
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco81I CCTNAGG 1 cut(s) 204
FaeI CATG 2 cut(s) 36, 75
FaiI YATR 3 cut(s) 34, 73, 228
FatI CATG 2 cut(s) 32, 71
Fnu4HI GCNGC 3 cut(s) 17, 59, 69
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 17, 59, 69
FspBI CTAG 1 cut(s) 162
GluI GCNGC 3 cut(s) 17, 59, 69
Hin1II CATG 2 cut(s) 36, 75
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 51, 81, 195
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 121, 172
HpyCH4V TGCA 3 cut(s) 75, 110, 239
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 2 cut(s) 36, 75
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 23, 100, 216
Lsp1109I GCAGC 3 cut(s) 3, 45, 80
LweI GCATC 5 cut(s) 3, 51, 81, 97, 165
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 180
MnlI CCTC 2 cut(s) 161, 199
MseI TTAA 1 cut(s) 250
MslI CAYNNNNRTG 1 cut(s) 173
NdeII GATC 1 cut(s) 102
NlaIII CATG 2 cut(s) 36, 75
NmeAIII GCCGAG 2 cut(s) 87, 120
NspI RCATGY 2 cut(s) 36, 75
PaeI GCATGC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 3 cut(s) 18, 60, 70
PstNI CAGNNNCTG 1 cut(s) 16
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 3 cut(s) 17, 59, 69
Sau3AI GATC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 244
SetI ASST 3 cut(s) 167, 205, 210
SfaNI GCATC 5 cut(s) 3, 51, 81, 97, 165
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 121, 172
TaqI TCGA 2 cut(s) 105, 130
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseI GCWGC 3 cut(s) 16, 58, 68
TspDTI ATGAA 1 cut(s) 113
XceI RCATGY 2 cut(s) 36, 75
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.