pycom05g14190

Chloride channel protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
17722976 .. 17723188
213 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGGAGGCCTGGACTGCATACGGCGCTTCCCCAACGCCCACTTCCACCGCCATTTATGTCCCCTGGCCTCTCCACCTCCTCCGTCTTCATCACCGCCGGCGAAAACCCTCCTCCTATTCTCTCCCACATCAAACACCCAAACTAGAACAATCAACACCAAAAATGCCAGTGCTGGGTACAAGAAGGAAAAGATGAAGATGGCAGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.69

Weight (kDa)

10.15

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029274)

Species Orthologous Gene IDs
pyrus_communis pycom05g14190 pycom05g14450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 95
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 174
AjnI CCWGG 2 cut(s) 9, 63
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AoxI GGCC 2 cut(s) 7, 66
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 78
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 11, 65
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 28
BglII AGATCT 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 11, 65
BmrFI CCNGG 2 cut(s) 11, 65
BpiI GAAGAC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 168
BseBI CCWGG 2 cut(s) 11, 65
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 69, 101
BseYI CCCAGC 1 cut(s) 173
BshFI GGCC 2 cut(s) 9, 68
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 9, 68
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 49, 95
BspANI GGCC 2 cut(s) 9, 68
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 11, 65
BstC8I GCNNGC 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 15, 24
BstNI CCWGG 2 cut(s) 11, 65
BstSCI CCNGG 2 cut(s) 9, 63
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 2 cut(s) 9, 68
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 97
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 2 cut(s) 9, 68
CviKI_1 RGCY 2 cut(s) 9, 68
CviQI GTAC 1 cut(s) 178
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco147I AGGCCT 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 9, 63
FaiI YATR 2 cut(s) 20, 58
FaqI GGGAC 1 cut(s) 45
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 9, 68
HapII CCGG 1 cut(s) 98
HhaI GCGC 1 cut(s) 27
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 24
HspAI GCGC 1 cut(s) 25
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 23, 50, 77, 111, 159, 181
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 2 cut(s) 78, 208
MflI RGATCY 1 cut(s) 207
MnlI CCTC 5 cut(s) 79, 87, 90, 119, 122
MreI CGCCGGCG 1 cut(s) 97
MroNI GCCGGC 1 cut(s) 97
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 11, 65
MvaI CCWGG 2 cut(s) 11, 65
MwoI GCNNNNNNNGC 2 cut(s) 15, 24
NaeI GCCGGC 1 cut(s) 99
NdeII GATC 1 cut(s) 207
NgoMIV GCCGGC 1 cut(s) 97
PceI AGGCCT 1 cut(s) 9
PdiI GCCGGC 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 9, 63
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 9, 63
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 11, 65
SetI ASST 1 cut(s) 79
SgeI CNNG 9 cut(s) 22, 23, 76, 77, 110, 156, 180, 186, 193
SgrAI CRCCGGYG 1 cut(s) 97
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 2 cut(s) 49, 95
SspMI CTAG 1 cut(s) 144
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 9, 63
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 78, 209
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 175
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.