pycom05g14490

Toll - interleukin 1 - resistance

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
18020501 .. 18022825
2325 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGTTCTTGGATATAGCATGTCTTCATAAAGGGGAGCCTGTGGATAAGGTACAACGAATGTTAGATGTTTGTGGATTCTCTGCAACAAGTGGAATTAGACTTCTCATTGATATGTCTCTCATATCAATTGTTTCAAAATGGGGAAGGGAAACCATAGAGATGCACAATTTGCTACAAGAAATGGGAAGGACAATTGTTCAGGAACAATGTATTAAAGATCCCGGTAAACGAAATAGGTTGTTCACTGGTGAAGATGTCTATCATGTATTGAAGAGTAACACGGTAAGAGAAACTCCAAATGTTGAAGCCATACGGGTTGATTGGTCTTACATTGAAAAGCGAGCATTGAAACTGTGGTTGGTAGCTACCAATTCACCGCTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.67

Weight (kDa)

7.74

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_ROQ1 PF23282 1 - 69 1.4e-17 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 377
AclWI GGATC 1 cut(s) 212
AfaI GTAC 1 cut(s) 51
AgsI TTSAA 5 cut(s) 135, 271, 305, 335, 349
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 260, 366
BbsI GAAGAC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 258
BseNI ACTGG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 250
BssMI GATC 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 283, 354
Bst6I CTCTTC 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 342
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 50
CviAII CATG 2 cut(s) 18, 263
CviJI RGCY 3 cut(s) 37, 308, 365
CviKI_1 RGCY 3 cut(s) 37, 308, 365
CviQI GTAC 1 cut(s) 50
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
FaeI CATG 2 cut(s) 21, 266
FaiI YATR 8 cut(s) 14, 19, 27, 113, 122, 155, 264, 311
FatI CATG 2 cut(s) 17, 262
FspBI CTAG 1 cut(s) 385
HapII CCGG 1 cut(s) 222
Hin1II CATG 2 cut(s) 21, 266
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 260, 366
Hpy166II GTNNAC 2 cut(s) 227, 243
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 227, 243
HpyAV CCTTC 2 cut(s) 138, 180
HpyCH4III ACNGT 2 cut(s) 283, 354
HpyCH4V TGCA 2 cut(s) 83, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
Hsp92II CATG 2 cut(s) 21, 266
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 51, 185, 231, 235
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 14, 263, 283
MfeI CAATTG 2 cut(s) 126, 192
MflI RGATCY 1 cut(s) 217
MluCI AATT 5 cut(s) 93, 126, 166, 192, 370
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 2 cut(s) 110, 158
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 2 cut(s) 126, 192
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 222
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 21, 266
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 1 cut(s) 21
PfeI GAWTC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 110, 158
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 222
SetI ASST 3 cut(s) 51, 239, 367
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 110, 158
Sse9I AATT 5 cut(s) 93, 126, 166, 192, 370
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 283, 354
TasI AATT 5 cut(s) 93, 126, 166, 192, 370
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 14
TspRI CASTG 1 cut(s) 250
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.