pycom05g14930

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
18519345 .. 18520155
811 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGTTGATTTGCCGAGTCACTTTTCCATGCACAAGAGGCAGCAATCATGCAACACCAGCGCCACCCAGTTACTAGCCCACCGCGGAGCAGACACTCAACTATCAAAGGAGAAATTGTCGTTGTCCAGAGCCATAAACAATCTGGTTCGGGAAGATCGAGCTTCTCTTCGATTATATAGTTCGACAGAAGTTGATCCAAAAACTGGCAAGGGCAAGTTGAGCAACCAAGCTTACCTCAAATGTGGAACCACCAAGACAGACGATGGTGAAAAAACCAGAACATATAGTGTCAAGTTCCAGGTTGAACTAAACTTTGGAAATCCAGGAGCTTTGGTTGTAACAAACCGAGGCAAGAAAAGGTTTTTCCTCCAATCTGCATCTCTTCAAATCCAGAACAATGAGATTATACTTTTCGACTGCCACTCCTGGGTGTATCCATTCCGAACGACCAAAAATTTAGATCGAATTTTCTTTGCAAATGCTAAATATCTTCCCAATCAGACACCCCAAGCTCTAATAGAACTGAGGAAGGAAGAGCTTATTAGCTTGAGATGCAGCAACATCAGCAGAATGAAAGTACTTCTCAGTACAACAAGACCCATGATAACGATTAGAAACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

208

Amino Acids

23.63

Weight (kDa)

10.01

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 63 - 158 2e-08 PLAT/LH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 82, 84
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 454, 465
AfaI GTAC 2 cut(s) 579, 589
AfiI CCNNNNNNNGG 2 cut(s) 203, 427
AgsI TTSAA 2 cut(s) 305, 386
AjnI CCWGG 3 cut(s) 297, 322, 425
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 6 cut(s) 161, 230, 329, 512, 538, 546
AluI AGCT 6 cut(s) 161, 230, 329, 512, 538, 546
AlwI GGATC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 40, 555
ApoI RAATTY 2 cut(s) 454, 465
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 278
BbvI GCAGC 2 cut(s) 52, 567
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 3 cut(s) 299, 324, 427
BciVI GTATCC 1 cut(s) 444
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 63
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 2 cut(s) 41, 556
BlsI GCNGC 2 cut(s) 42, 557
BmcAI AGTACT 1 cut(s) 579
Bme1390I CCNGG 3 cut(s) 299, 324, 427
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 3 cut(s) 299, 324, 427
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 386, 542
BmuI ACTGGG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 82, 346, 426
BsaXI ACNNNNNCTCC 6 cut(s) 101, 131, 318, 348, 407, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 427
Bse1I ACTGG 2 cut(s) 67, 208
BseBI CCWGG 3 cut(s) 299, 324, 427
BseDI CCNNGG 3 cut(s) 82, 346, 426
BseLI CCNNNNNNNGG 2 cut(s) 203, 427
BseMII CTCAG 2 cut(s) 515, 598
BseNI ACTGG 2 cut(s) 67, 208
BseXI GCAGC 2 cut(s) 52, 567
Bsh1236I CGCG 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 203, 427
Bsp143I GATC 3 cut(s) 154, 193, 460
BspACI CCGC 2 cut(s) 82, 84
BspCNI CTCAG 2 cut(s) 516, 597
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 188
BspQI GCTCTTC 1 cut(s) 528
BsrI ACTGG 2 cut(s) 67, 208
BssECI CCNNGG 3 cut(s) 82, 346, 426
BssMI GATC 3 cut(s) 154, 193, 460
Bst2UI CCWGG 3 cut(s) 299, 324, 427
Bst6I CTCTTC 3 cut(s) 171, 387, 528
BstDEI CTNAG 2 cut(s) 524, 584
BstDSI CCRYGG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 157, 196, 463
BstMBI GATC 3 cut(s) 154, 193, 460
BstMWI GCNNNNNNNGC 5 cut(s) 37, 57, 219, 552, 564
BstNI CCWGG 3 cut(s) 299, 324, 427
BstSCI CCNGG 3 cut(s) 297, 322, 425
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 52, 567
BsuI GTATCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 82
CfoI GCGC 1 cut(s) 62
Cfr42I CCGCGG 1 cut(s) 85
Csp6I GTAC 2 cut(s) 578, 588
CviAII CATG 3 cut(s) 28, 48, 601
CviJI RGCY 8 cut(s) 77, 131, 161, 230, 329, 512, 538, 546
CviKI_1 RGCY 8 cut(s) 77, 131, 161, 230, 329, 512, 538, 546
CviQI GTAC 2 cut(s) 578, 588
DdeI CTNAG 2 cut(s) 524, 584
DpnI GATC 3 cut(s) 156, 195, 462
DpnII GATC 3 cut(s) 154, 193, 460
Eam1104I CTCTTC 3 cut(s) 171, 387, 528
EarI CTCTTC 3 cut(s) 171, 387, 528
EcoRII CCWGG 3 cut(s) 297, 322, 425
FaeI CATG 3 cut(s) 31, 51, 604
FaiI YATR 9 cut(s) 29, 49, 134, 175, 177, 283, 285, 407, 602
FatI CATG 3 cut(s) 27, 47, 600
Fnu4HI GCNGC 2 cut(s) 41, 556
Fsp4HI GCNGC 2 cut(s) 41, 556
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 41, 556
HaeII RGCGCY 1 cut(s) 63
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 31, 51, 604
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 443, 501
Hpy188III TCNNGA 3 cut(s) 126, 149, 391
HpyAV CCTTC 1 cut(s) 523
HpyCH4V TGCA 5 cut(s) 31, 51, 377, 476, 555
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 57, 219, 552, 564
HpyF3I CTNAG 2 cut(s) 524, 584
Hsp92II CATG 3 cut(s) 31, 51, 604
HspAI GCGC 1 cut(s) 60
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 3 cut(s) 154, 193, 460
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 2 cut(s) 86, 326
Lsp1109I GCAGC 2 cut(s) 52, 567
LweI GCATC 2 cut(s) 386, 542
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 17, 69, 337
MalI GATC 3 cut(s) 156, 195, 462
MboI GATC 3 cut(s) 154, 193, 460
MboII GAAGA 5 cut(s) 158, 164, 374, 482, 545
MluCI AATT 3 cut(s) 113, 454, 465
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 5 cut(s) 30, 245, 341, 377, 519
MspA1I CMGCKG 1 cut(s) 84
MspR9I CCNGG 3 cut(s) 299, 324, 427
MvaI CCWGG 3 cut(s) 299, 324, 427
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 5 cut(s) 37, 57, 219, 552, 564
NdeII GATC 3 cut(s) 154, 193, 460
NlaIII CATG 3 cut(s) 31, 51, 604
NlaIV GGNNCC 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 2 cut(s) 42, 557
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 297, 322, 425
PspGI CCWGG 3 cut(s) 297, 322, 425
PspN4I GGNNCC 1 cut(s) 247
RsaI GTAC 2 cut(s) 579, 589
RsaNI GTAC 2 cut(s) 578, 588
SacII CCGCGG 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 528
SatI GCNGC 2 cut(s) 41, 556
Sau3AI GATC 3 cut(s) 154, 193, 460
ScaI AGTACT 1 cut(s) 579
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 299, 324, 427
SetI ASST 9 cut(s) 163, 232, 237, 303, 331, 362, 514, 540, 548
SfaNI GCATC 2 cut(s) 386, 542
Sfr303I CCGCGG 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 3 cut(s) 113, 454, 465
SsiI CCGC 2 cut(s) 82, 84
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 297, 322, 425
TaqI TCGA 5 cut(s) 157, 169, 182, 414, 463
TasI AATT 3 cut(s) 113, 454, 465
TatI WGTACW 2 cut(s) 577, 587
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 2 cut(s) 40, 555
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 587
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 454, 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.