Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18573552 .. 18576127

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGACAAGATTCAAGAAGGGCCTTTATCCCAAACAGATAATAAGTCAAAAAGATTTGCTCAGTCGCGGATCTCAGGGTAAAGGCCCTAAATATACGGTGGCTGTGGCCTCCATCAGCCTCCCATCCTTTAGAAAATTGGTAAAAAAATGGGACCCAAAACAAAAACAAGCGCCTCTGGCGAACCAAAGCTGTGCTTTGCCCTTTCCCATGTGCTCTTTCACTGCCACTCTGCCACTCTGCCACACCCAGTTTCTGGATTTTTGCATTTTTGCTGCTCCTTCTTCCCAACAGACCAAAATTTCAAAAACCCAAATCTCTTATTTTCTGGTTGGCTGTAGAGAAGATCTCGATTCGCAGATGCCCTCTTCTTGTTTATTCAAGCTTGTTATCTTTCTCTGCTCATTGGGTTTTGGTTTGGGAGCAGACCCTTATGTGTTCTATGACTGGACTGTCTCCTACATCACTGCCTCCCCGCTTGGGGTTAAGCAACAGGTTATTGGGATTAACGGGCAGTTTCCAGGACCAATTCTCAATGTTACTACAAACTGGAATGTTGTTATCAATGTGAAAAATAACTTGGATGAGCCGTTGCTTCTCACTTGGAATGGTATACAAAATCGAAAAAACTCTTGGCAAGATGGTGTATCAGGGACTAATTGTCCAATTCATGCTGGATGGAATTGGACATACGAATTTCAGGTTAAAGATCAGATAGGAAGTTTCTTTTACTTCCCTTCCCTAAACTTCCAGAGAGCATCAGGTGGATATGGTGGAATCACCATAAACAACCGAAATGTTATTCCACTACCTTTCACTGTTCCAGATGGAGATATTACCCTCTTTATTACTGATTGGTATACAAAGAGTCATAAGGACCTTAGGAAAGATGTTGAAAGTGGTACTAGCCTTGGAATTCCTGACGGTGTCCTCATCAATGGAATAGGTCCCTTTCGATTTGATCAGGGACTTATTGCAGGAGGCAATTCTTTCCTGACAGTAAATGTTGAACCAGGAAAAACATACCGCTTCCGTGTGCACAATGTTGGTATCGCAACTAGCTTGAATTTCAGAATACAAAATCATAACTTGCTTCTAGTGGAGACTGAAGGATCGATACACAGTTCAGCAGAATTATGCGAATATGGATATTCATGTCGGTCAGTCATTTTCATTCTTGGTTACAATGGATCAAAATGCCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

402

Amino Acids

44.56

Weight (kDa)

9.07

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	151 - 265	7e-42	Multicopper oxidase
Cu-oxidase	PF00394	277 - 374	5e-24	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	2 cut(s)	610, 857
AccII	CGCG	1 cut(s)	66
AciI	CCGC	3 cut(s)	66, 473, 1024
AclWI	GGATC	3 cut(s)	76, 1117, 1195
AcsI	RAATTY	4 cut(s)	297, 692, 912, 1063
AcuI	CTGAAG	1 cut(s)	1125
AfaI	GTAC	1 cut(s)	901
AfiI	CCNNNNNNNGG	3 cut(s)	253, 477, 478
AgsI	TTSAA	6 cut(s)	13, 303, 379, 893, 1007, 1063
AhdI	GACNNNNNGTC	1 cut(s)	657
AjnI	CCWGG	2 cut(s)	517, 1009
AjuI	GAANNNNNNNTTGG	4 cut(s)	560, 592, 613, 645
AluBI	AGCT	3 cut(s)	189, 382, 1059
AluI	AGCT	3 cut(s)	189, 382, 1059
Alw21I	GWGCWC	2 cut(s)	215, 1038
Alw26I	GTCTC	2 cut(s)	457, 1094
Alw44I	GTGCAC	1 cut(s)	1034
AlwI	GGATC	3 cut(s)	76, 1117, 1195
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	3 cut(s)	19, 82, 105
ApaLI	GTGCAC	1 cut(s)	1034
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	4 cut(s)	297, 692, 912, 1063
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	6 cut(s)	19, 83, 151, 521, 874, 944
AsuHPI	GGTGA	1 cut(s)	769
AvaII	GGWCC	4 cut(s)	151, 521, 874, 944
AxyI	CCTNAGG	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	1038
BarI	GAAGNNNNNNTAC	2 cut(s)	1098, 1130
Bbv12I	GWGCWC	2 cut(s)	215, 1038
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	5 cut(s)	119, 130, 632, 669, 818
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	2 cut(s)	519, 1011
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	457, 1094
BfaI	CTAG	3 cut(s)	903, 1056, 1094
BfmI	CTRYAG	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	173
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	519, 1011
Bme18I	GGWCC	4 cut(s)	151, 521, 874, 944
BmeRI	GACNNNNNGTC	1 cut(s)	657
BmgT120I	GGNCC	6 cut(s)	19, 83, 151, 521, 874, 944
BmiI	GGNNCC	3 cut(s)	152, 153, 946
BmrFI	CCNGG	2 cut(s)	519, 1011
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	348, 764
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
Bsa29I	ATCGAT	1 cut(s)	1112
BsaJI	CCNNGG	1 cut(s)	907
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 477, 478
Bse1I	ACTGG	3 cut(s)	247, 449, 551
Bse21I	CCTNAGG	1 cut(s)	878
BseBI	CCWGG	2 cut(s)	519, 1011
BseCI	ATCGAT	1 cut(s)	1112
BseDI	CCNNGG	1 cut(s)	907
BseGI	GGATG	3 cut(s)	122, 586, 680
BseLI	CCNNNNNNNGG	3 cut(s)	253, 477, 478
BseMII	CTCAG	2 cut(s)	73, 86
BseNI	ACTGG	3 cut(s)	247, 449, 551
BseSI	GKGCMC	1 cut(s)	1038
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	21, 84, 107
BshVI	ATCGAT	1 cut(s)	1112
BsiHKAI	GWGCWC	2 cut(s)	215, 1038
BslFI	GGGAC	4 cut(s)	164, 664, 930, 978
BslI	CCNNNNNNNGG	3 cut(s)	253, 477, 478
BsmAI	GTCTC	2 cut(s)	457, 1094
BsmFI	GGGAC	4 cut(s)	164, 664, 930, 978
BsnI	GGCC	3 cut(s)	21, 84, 107
Bsp1286I	GDGCHC	2 cut(s)	215, 1038
Bsp143I	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
BspACI	CCGC	3 cut(s)	66, 473, 1024
BspANI	GGCC	3 cut(s)	21, 84, 107
BspCNI	CTCAG	2 cut(s)	72, 85
BspDI	ATCGAT	1 cut(s)	1112
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	152, 153, 946
BspPI	GGATC	3 cut(s)	76, 1117, 1195
BsrI	ACTGG	3 cut(s)	247, 449, 551
BssECI	CCNNGG	1 cut(s)	907
BssMI	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
BssNAI	GTATAC	2 cut(s)	611, 858
BssT1I	CCWWGG	1 cut(s)	907
Bst1107I	GTATAC	2 cut(s)	611, 858
Bst2UI	CCWGG	2 cut(s)	519, 1011
Bst4CI	ACNGT	6 cut(s)	97, 451, 817, 923, 997, 1121
Bst6I	CTCTTC	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	59, 72, 878
BstF5I	GGATG	3 cut(s)	122, 586, 680
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	6 cut(s)	71, 346, 709, 961, 1112, 1190
BstMAI	GTCTC	2 cut(s)	457, 1094
BstMBI	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	519, 1011
BstSCI	CCNGG	2 cut(s)	517, 1009
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	1038
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	68, 343
BstYI	RGATCY	2 cut(s)	68, 343
BstZ17I	GTATAC	2 cut(s)	611, 858
Bsu15I	ATCGAT	1 cut(s)	1112
Bsu36I	CCTNAGG	1 cut(s)	878
BsuRI	GGCC	3 cut(s)	21, 84, 107
BsuTUI	ATCGAT	1 cut(s)	1112
BtsCI	GGATG	3 cut(s)	122, 586, 680
BtsI	GCAGTG	2 cut(s)	219, 462
BtsIMutI	CAGTG	3 cut(s)	219, 462, 813
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	6 cut(s)	19, 83, 151, 521, 874, 944
ClaI	ATCGAT	1 cut(s)	1112
Csp6I	GTAC	1 cut(s)	900
CviAII	CATG	3 cut(s)	208, 668, 1152
CviQI	GTAC	1 cut(s)	900
DdeI	CTNAG	3 cut(s)	59, 72, 878
DpnI	GATC	6 cut(s)	70, 345, 708, 960, 1111, 1189
DpnII	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
DrdI	GACNNNNNNGTC	1 cut(s)	449
DriI	GACNNNNNGTC	1 cut(s)	657
DseDI	GACNNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	907
Eco47I	GGWCC	4 cut(s)	151, 521, 874, 944
Eco57I	CTGAAG	1 cut(s)	1125
Eco81I	CCTNAGG	1 cut(s)	878
EcoO109I	RGGNCCY	5 cut(s)	19, 83, 151, 874, 944
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	2 cut(s)	517, 1009
EcoT14I	CCWWGG	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	907
FaeI	CATG	3 cut(s)	211, 671, 1155
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	4 cut(s)	164, 664, 930, 978
FatI	CATG	3 cut(s)	207, 667, 1151
FauI	CCCGC	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	958
FblI	GTMKAC	2 cut(s)	610, 857
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	3 cut(s)	109, 593, 687
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	3 cut(s)	903, 1056, 1094
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	21, 84, 107
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	211, 671, 1155
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	9, 350, 774, 865
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	3 cut(s)	611, 858, 1036
Hpy188I	TCNGA	2 cut(s)	711, 1070
Hpy188III	TCNNGA	7 cut(s)	13, 254, 347, 748, 821, 917, 991
Hpy8I	GTNNAC	3 cut(s)	611, 858, 1036
HpyAV	CCTTC	4 cut(s)	10, 288, 744, 1100
HpyCH4III	ACNGT	6 cut(s)	97, 451, 817, 923, 997, 1121
HpyCH4V	TGCA	3 cut(s)	264, 974, 1036
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	59, 72, 878
Hsp92II	CATG	3 cut(s)	211, 671, 1155
HspAI	GCGC	1 cut(s)	170
KflI	GGGWCCC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
LmnI	GCTCC	2 cut(s)	280, 419
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	348, 764
MaeI	CTAG	3 cut(s)	903, 1056, 1094
MaeIII	GTNAC	2 cut(s)	535, 1178
MalI	GATC	6 cut(s)	70, 345, 708, 960, 1111, 1189
MboI	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
MboII	GAAGA	3 cut(s)	273, 353, 357
MflI	RGATCY	2 cut(s)	68, 343
MhlI	GDGCHC	2 cut(s)	215, 1038
MlyI	GAGTC	1 cut(s)	874
MnlI	CCTC	8 cut(s)	118, 128, 183, 373, 478, 848, 938, 971
MseI	TTAA	3 cut(s)	483, 504, 702
MspR9I	CCNGG	2 cut(s)	519, 1011
MvaI	CCWGG	2 cut(s)	519, 1011
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
NlaIII	CATG	3 cut(s)	211, 671, 1155
NlaIV	GGNNCC	3 cut(s)	152, 153, 946
PfeI	GAWTC	3 cut(s)	9, 350, 774
PflFI	GACNNNGTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	873
PpuMI	RGGWCCY	3 cut(s)	151, 874, 944
Psp5II	RGGWCCY	3 cut(s)	151, 874, 944
Psp6I	CCWGG	2 cut(s)	517, 1009
PspGI	CCWGG	2 cut(s)	517, 1009
PspN4I	GGNNCC	3 cut(s)	152, 153, 946
PspPI	GGNCC	6 cut(s)	19, 83, 151, 521, 874, 944
PspPPI	RGGWCCY	3 cut(s)	151, 874, 944
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	68, 343
PsyI	GACNNNGTC	1 cut(s)	923
RsaI	GTAC	1 cut(s)	901
RsaNI	GTAC	1 cut(s)	900
SaqAI	TTAA	3 cut(s)	483, 504, 702
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	6 cut(s)	68, 343, 706, 958, 1109, 1187
Sau96I	GGNCC	6 cut(s)	19, 83, 151, 521, 874, 944
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	2 cut(s)	519, 1011
SduI	GDGCHC	2 cut(s)	215, 1038
SetI	ASST	9 cut(s)	191, 384, 495, 702, 763, 811, 879, 946, 1061
SfaNI	GCATC	2 cut(s)	348, 764
SfcI	CTRYAG	1 cut(s)	334
SinI	GGWCC	4 cut(s)	151, 521, 874, 944
SsiI	CCGC	3 cut(s)	66, 473, 1024
SspMI	CTAG	3 cut(s)	903, 1056, 1094
StyD4I	CCNGG	2 cut(s)	517, 1009
StyI	CCWWGG	1 cut(s)	907
TaaI	ACNGT	6 cut(s)	97, 451, 817, 923, 997, 1121
TaqI	TCGA	4 cut(s)	348, 619, 952, 1112
TaqII	GACCGA	1 cut(s)	1146
TfiI	GAWTC	3 cut(s)	9, 350, 774
Tru1I	TTAA	3 cut(s)	483, 504, 702
Tru9I	TTAA	3 cut(s)	483, 504, 702
TscAI	CASTG	3 cut(s)	226, 469, 820
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	656, 1140, 1159
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	3 cut(s)	226, 469, 820
Tth111I	GACNNNGTC	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	1034
VpaK11BI	GGWCC	4 cut(s)	151, 521, 874, 944
XapI	RAATTY	4 cut(s)	297, 692, 912, 1063
XmiI	GTMKAC	2 cut(s)	610, 857
XspI	CTAG	3 cut(s)	903, 1056, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.