pycom05g15240

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
18756648 .. 18757734
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGAGGAGAGAGGATCCTCGCCACATCCTCTTTGTGAGAATCCTAAGAATCCTCCAATCACATCCGTTCATCGTACATCGTACGGTCAACAGTAGTGGTATATCGTCCCCCGGTCGACGTTGTTTTGGATTCCGACTCCCTTTCCCTCCTCCCTTTTGTGAAACGGGTGGTTCTTCGCCGTTGATCGATCTGCAAGGCAAGCTTTCTAACCGCGCGCTCTCTCTTTCTCGTCTGAAGACTTACTATGGCCGGTGTAGAGGAATTCAAATTCAAGGGATACGAATTCGAAGAGACTCCGCCTCCCAGAGGCCGACGACTAACATGGCTGGATCGATCATGCTGTGGCCAGTTCCGCTGGCAATCGTATTTTTGTCAGTCCTTTGGGCCGTCATTTGGGCCACGTTGCAGACAAGGACACGTGGCCCCGAGTTCCGAGTCCAATCGGCCATCATGTCTCAACTCAACGCGACTCAGTCGCAGTTGACGGCCACCTGGGACCTGTCCGTGGTGGTCACAAACCCCAACCCCGGTGAAGGTCACGACCTCTGCGTCGAGAGACTGGTGGCCTACATCTTCTACGGGGACAAAGAGAGGATGATGATGCTGGCAGTGAAGCCGGTGCGCCTACAACCGCGTGTCTTGTTGTCAAGCAAGAGGAACGAGGCCACGGCCAGTTTCCGACTCCAAGCGGTGGAGATGTACGTGGGACAAAATGTGTCCAACGAAATACTGCAAGGGCTTAGCGCTCCTGGCTCTGCATCTGGCTCTCTGGTGAAATTTGGACTGAAGCTCAAGGCTTGGTACAAGGATATCGGCAACAAGTCGGGGTTTTCGCCGCTCTTCTGCGACCGGGTGGTTGATTTTGGGGTTTCCCAGATCGATTACCTTAACGGTGGGACTGGGATTTCGACAATTAAGGAGGGTCAGCCAAGGGAATGCTATTTTTACGCGGCAAAGGATTATTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

324

Amino Acids

36.21

Weight (kDa)

9.95

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 691
AccBSI CCGCTC 1 cut(s) 838
AccI GTMKAC 1 cut(s) 115
AccII CGCG 5 cut(s) 213, 215, 467, 634, 950
AciI CCGC 7 cut(s) 211, 297, 353, 632, 689, 836, 950
AclWI GGATC 3 cut(s) 8, 21, 337
AcoI YGGCCR 5 cut(s) 247, 344, 444, 486, 669
AcsI RAATTY 4 cut(s) 261, 267, 282, 776
AcuI CTGAAG 2 cut(s) 254, 806
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 4 cut(s) 75, 82, 701, 803
AfeI AGCGCT 1 cut(s) 745
AfiI CCNNNNNNNGG 6 cut(s) 306, 393, 505, 527, 533, 691
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 266, 272
AjnI CCWGG 2 cut(s) 491, 748
AluBI AGCT 2 cut(s) 202, 790
AluI AGCT 2 cut(s) 202, 790
Alw26I GTCTC 3 cut(s) 285, 459, 550
AlwI GGATC 3 cut(s) 8, 21, 337
Ama87I CYCGRG 1 cut(s) 425
Aor51HI AGCGCT 1 cut(s) 745
ApoI RAATTY 4 cut(s) 261, 267, 282, 776
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
AspLEI GCGC 4 cut(s) 215, 217, 624, 746
AspS9I GGNCC 4 cut(s) 384, 396, 422, 496
AsuC2I CCSGG 3 cut(s) 111, 528, 851
AsuHPI GGTGA 2 cut(s) 542, 784
AsuII TTCGAA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 496
BalI TGGCCA 1 cut(s) 346
BamHI GGATCC 1 cut(s) 13
BbrPI CACGTG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 242
BccI CCATC 1 cut(s) 455
BceAI ACGGC 4 cut(s) 163, 371, 501, 684
BciT130I CCWGG 2 cut(s) 493, 750
BciVI GTATCC 1 cut(s) 270
BcnI CCSGG 3 cut(s) 111, 528, 851
BcoDI GTCTC 3 cut(s) 285, 459, 550
BfoI RGCGCY 1 cut(s) 747
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 2 cut(s) 836, 951
BlpI GCTNAGC 1 cut(s) 740
BlsI GCNGC 2 cut(s) 837, 952
Bme1390I CCNGG 5 cut(s) 111, 493, 528, 750, 851
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 4 cut(s) 384, 396, 422, 496
BmiI GGNNCC 3 cut(s) 15, 424, 497
BmrFI CCNGG 5 cut(s) 111, 493, 528, 750, 851
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 2 cut(s) 591, 767
BmuI ACTGGG 1 cut(s) 909
BpiI GAAGAC 1 cut(s) 242
Bpu1102I GCTNAGC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 776
BpuMI CCSGG 3 cut(s) 111, 528, 851
Bsa29I ATCGAT 3 cut(s) 186, 332, 879
BsaAI YACGTR 2 cut(s) 419, 703
BsaJI CCNNGG 6 cut(s) 109, 492, 504, 526, 666, 929
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 306, 393, 505, 527, 533, 691
Bse118I RCCGGY 2 cut(s) 249, 616
Bse1I ACTGG 4 cut(s) 347, 564, 672, 904
BseBI CCWGG 2 cut(s) 493, 750
BseCI ATCGAT 3 cut(s) 186, 332, 879
BseDI CCNNGG 6 cut(s) 109, 492, 504, 526, 666, 929
BseGI GGATG 3 cut(s) 24, 61, 600
BseLI CCNNNNNNNGG 6 cut(s) 306, 393, 505, 527, 533, 691
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 4 cut(s) 347, 564, 672, 904
BsePI GCGCGC 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 19, 138
Bsh1236I CGCG 5 cut(s) 213, 215, 467, 634, 950
Bsh1285I CGRYCG 2 cut(s) 115, 850
BshVI ATCGAT 3 cut(s) 186, 332, 879
BsiEI CGRYCG 2 cut(s) 115, 850
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 5 cut(s) 111, 250, 528, 617, 850
BsiWI CGTACG 1 cut(s) 80
BslFI GGGAC 5 cut(s) 91, 509, 596, 720, 910
BslI CCNNNNNNNGG 6 cut(s) 306, 393, 505, 527, 533, 691
BsmAI GTCTC 3 cut(s) 285, 459, 550
BsmFI GGGAC 5 cut(s) 91, 509, 596, 720, 910
BsmI GAATGC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 286
Bsp143I GATC 6 cut(s) 13, 183, 187, 329, 333, 876
Bsp1720I GCTNAGC 1 cut(s) 740
BspACI CCGC 7 cut(s) 211, 297, 353, 632, 689, 836, 950
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 3 cut(s) 186, 332, 879
BspFNI CGCG 5 cut(s) 213, 215, 467, 634, 950
BspLI GGNNCC 3 cut(s) 15, 424, 497
BspPI GGATC 3 cut(s) 8, 21, 337
BspQI GCTCTTC 1 cut(s) 845
BspT104I TTCGAA 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 838
BsrFI RCCGGY 2 cut(s) 249, 616
BsrI ACTGG 4 cut(s) 347, 564, 672, 904
BssAI RCCGGY 2 cut(s) 249, 616
BssECI CCNNGG 6 cut(s) 109, 492, 504, 526, 666, 929
BssHII GCGCGC 1 cut(s) 213
BssMI GATC 6 cut(s) 13, 183, 187, 329, 333, 876
BssT1I CCWWGG 1 cut(s) 929
Bst2UI CCWGG 2 cut(s) 493, 750
Bst4CI ACNGT 3 cut(s) 85, 92, 893
Bst6I CTCTTC 2 cut(s) 283, 845
BstBAI YACGTR 2 cut(s) 419, 703
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 4 cut(s) 200, 215, 357, 606
BstDEI CTNAG 3 cut(s) 44, 471, 740
BstDSI CCRYGG 2 cut(s) 504, 666
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 3 cut(s) 24, 61, 600
BstFNI CGCG 5 cut(s) 213, 215, 467, 634, 950
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 4 cut(s) 215, 217, 624, 746
BstKTI GATC 6 cut(s) 16, 186, 190, 332, 336, 879
BstMAI GTCTC 3 cut(s) 285, 459, 550
BstMBI GATC 6 cut(s) 13, 183, 187, 329, 333, 876
BstMCI CGRYCG 2 cut(s) 115, 850
BstMWI GCNNNNNNNGC 3 cut(s) 199, 352, 750
BstNI CCWGG 2 cut(s) 493, 750
BstSCI CCNGG 5 cut(s) 109, 491, 526, 748, 849
BstUI CGCG 5 cut(s) 213, 215, 467, 634, 950
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu15I ATCGAT 3 cut(s) 186, 332, 879
BsuI GTATCC 1 cut(s) 270
BsuTUI ATCGAT 3 cut(s) 186, 332, 879
BtgI CCRYGG 2 cut(s) 504, 666
BtsCI GGATG 3 cut(s) 24, 61, 600
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 4 cut(s) 200, 215, 357, 606
CfoI GCGC 4 cut(s) 215, 217, 624, 746
Cfr10I RCCGGY 2 cut(s) 249, 616
Cfr13I GGNCC 4 cut(s) 384, 396, 422, 496
ClaI ATCGAT 3 cut(s) 186, 332, 879
CseI GACGC 1 cut(s) 538
Csp6I GTAC 4 cut(s) 74, 81, 700, 802
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 322, 337, 451
CviQI GTAC 4 cut(s) 74, 81, 700, 802
DdeI CTNAG 3 cut(s) 44, 471, 740
DpnI GATC 6 cut(s) 15, 185, 189, 331, 335, 878
DpnII GATC 6 cut(s) 13, 183, 187, 329, 333, 876
DrdI GACNNNNNNGTC 1 cut(s) 548
DseDI GACNNNNNNGTC 1 cut(s) 548
EaeI YGGCCR 5 cut(s) 247, 344, 444, 486, 669
Eam1104I CTCTTC 2 cut(s) 283, 845
EarI CTCTTC 2 cut(s) 283, 845
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 929
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 496
Eco47III AGCGCT 1 cut(s) 745
Eco57I CTGAAG 2 cut(s) 254, 806
Eco72I CACGTG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 2 cut(s) 261, 282
EcoRII CCWGG 2 cut(s) 491, 748
EcoRV GATATC 1 cut(s) 811
EcoT14I CCWWGG 1 cut(s) 929
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 3 cut(s) 325, 340, 454
FaiI YATR 5 cut(s) 101, 246, 323, 338, 452
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 5 cut(s) 91, 509, 596, 720, 910
FatI CATG 3 cut(s) 321, 336, 450
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 836, 951
FokI GGATG 3 cut(s) 11, 48, 607
Fsp4HI GCNGC 2 cut(s) 836, 951
GlaI GCGC 4 cut(s) 214, 216, 623, 745
GluI GCNGC 2 cut(s) 836, 951
HaeII RGCGCY 1 cut(s) 747
HapII CCGG 5 cut(s) 111, 250, 528, 617, 850
HgaI GACGC 1 cut(s) 538
HhaI GCGC 4 cut(s) 215, 217, 624, 746
Hin1II CATG 3 cut(s) 325, 340, 454
Hin6I GCGC 4 cut(s) 213, 215, 622, 744
HinP1I GCGC 4 cut(s) 213, 215, 622, 744
HincII GTYRAC 3 cut(s) 88, 116, 483
HindII GTYRAC 3 cut(s) 88, 116, 483
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 8 cut(s) 39, 48, 129, 135, 293, 435, 469, 681
HpaII CCGG 5 cut(s) 111, 250, 528, 617, 850
HphI GGTGA 2 cut(s) 542, 784
Hpy166II GTNNAC 3 cut(s) 88, 116, 483
Hpy188I TCNGA 4 cut(s) 134, 234, 434, 680
Hpy188III TCNNGA 2 cut(s) 539, 553
Hpy8I GTNNAC 3 cut(s) 88, 116, 483
Hpy99I CGWCG 3 cut(s) 120, 316, 554
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 3 cut(s) 85, 92, 893
HpyCH4IV ACGT 4 cut(s) 118, 401, 418, 702
HpyCH4V TGCA 4 cut(s) 193, 406, 733, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 352, 750
HpyF3I CTNAG 3 cut(s) 44, 471, 740
HpySE526I ACGT 4 cut(s) 118, 401, 418, 702
Hsp92II CATG 3 cut(s) 325, 340, 454
HspAI GCGC 4 cut(s) 213, 215, 622, 744
Kzo9I GATC 6 cut(s) 13, 183, 187, 329, 333, 876
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 1 cut(s) 751
LweI GCATC 2 cut(s) 591, 767
MaeII ACGT 4 cut(s) 118, 401, 418, 702
MaeIII GTNAC 2 cut(s) 511, 536
MalI GATC 6 cut(s) 15, 185, 189, 331, 335, 878
MbiI CCGCTC 1 cut(s) 838
MboI GATC 6 cut(s) 13, 183, 187, 329, 333, 876
MboII GAAGA 5 cut(s) 165, 247, 300, 565, 832
MflI RGATCY 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 5 cut(s) 261, 267, 282, 776, 912
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 5 cut(s) 129, 287, 444, 463, 675
MmeI TCCRAC 3 cut(s) 157, 703, 744
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 2 cut(s) 888, 915
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 5 cut(s) 111, 250, 528, 617, 850
MspR9I CCNGG 5 cut(s) 111, 493, 528, 750, 851
Mva1269I GAATGC 1 cut(s) 941
MvaI CCWGG 2 cut(s) 493, 750
MvnI CGCG 5 cut(s) 213, 215, 467, 634, 950
MwoI GCNNNNNNNGC 3 cut(s) 199, 352, 750
NciI CCSGG 3 cut(s) 111, 528, 851
NdeII GATC 6 cut(s) 13, 183, 187, 329, 333, 876
NlaIII CATG 3 cut(s) 325, 340, 454
NlaIV GGNNCC 3 cut(s) 15, 424, 497
NmuCI GTSAC 2 cut(s) 511, 536
NspV TTCGAA 1 cut(s) 286
PauI GCGCGC 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PctI GAATGC 1 cut(s) 941
PfeI GAWTC 3 cut(s) 39, 48, 129
Pfl23II CGTACG 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 472
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 2 cut(s) 837, 952
PleI GAGTC 5 cut(s) 129, 287, 443, 463, 675
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 5 cut(s) 129, 287, 443, 463, 675
Ppu21I YACGTR 2 cut(s) 419, 703
PpuMI RGGWCCY 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 491, 748
PspCI CACGTG 1 cut(s) 419
PspGI CCWGG 2 cut(s) 491, 748
PspLI CGTACG 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 15, 424, 497
PspPI GGNCC 4 cut(s) 384, 396, 422, 496
PspPPI RGGWCCY 1 cut(s) 496
PsuI RGATCY 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 472
PteI GCGCGC 1 cut(s) 213
RsaI GTAC 4 cut(s) 75, 82, 701, 803
RsaNI GTAC 4 cut(s) 74, 81, 700, 802
SalI GTCGAC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 888, 915
SatI GCNGC 2 cut(s) 836, 951
Sau3AI GATC 6 cut(s) 13, 183, 187, 329, 333, 876
Sau96I GGNCC 4 cut(s) 384, 396, 422, 496
SchI GAGTC 5 cut(s) 129, 287, 444, 463, 675
ScrFI CCNGG 5 cut(s) 111, 493, 528, 750, 851
SfaNI GCATC 2 cut(s) 591, 767
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 5 cut(s) 261, 267, 282, 776, 912
SsiI CCGC 7 cut(s) 211, 297, 353, 632, 689, 836, 950
StyD4I CCNGG 5 cut(s) 109, 491, 526, 748, 849
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 3 cut(s) 85, 92, 893
TaiI ACGT 4 cut(s) 121, 404, 421, 705
TaqI TCGA 7 cut(s) 115, 186, 286, 332, 552, 879, 908
TasI AATT 5 cut(s) 261, 267, 282, 776, 912
TauI GCSGC 2 cut(s) 838, 953
TfiI GAWTC 3 cut(s) 39, 48, 129
Tru1I TTAA 2 cut(s) 888, 915
Tru9I TTAA 2 cut(s) 888, 915
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 2 cut(s) 511, 536
Tsp45I GTSAC 2 cut(s) 511, 536
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 2 cut(s) 54, 493
TspRI CASTG 1 cut(s) 615
Tth111I GACNNNGTC 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 496
XagI CCTNNNNNAGG 1 cut(s) 304
XapI RAATTY 4 cut(s) 261, 267, 282, 776
XmiI GTMKAC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.