pycom05g15250

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
18764640 .. 18765588
949 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGAGCTTTATCAGGAGCTTAGGGAAAATTGGGAGAGACTGTATTTGGACGAGGGTTATTCCAAAAAAATTGCTCAGGATCATGCGAATTATGAATCTGCTGAGGACGATGATCACGATTTCTCACCGTATAGGAACAAGCGGTTCCATCGTGAGCCATATAAGGACAATGGTTTCAGAAGTAGGCAAGGGGATACCTGGGAAAAGGTCAACCAGATTCGGGATAAATTTCAGTATGACAGAGAAAGGAGAATGAGAGAGAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

11.21

Weight (kDa)

5.93

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 220
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 7, 19
AluI AGCT 2 cut(s) 7, 19
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 199
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 199
Bpu10I CCTNAGC 3 cut(s) 20, 75, 102
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 89, 93
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 79, 112
BspACI CCGC 1 cut(s) 142
BspCNI CTCAG 2 cut(s) 88, 94
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 79, 112
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 42, 129
BstDEI CTNAG 3 cut(s) 20, 75, 102
BstKTI GATC 2 cut(s) 82, 115
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 79, 112
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BsuI GTATCC 1 cut(s) 187
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 7, 19, 157
CviKI_1 RGCY 3 cut(s) 7, 19, 157
DdeI CTNAG 3 cut(s) 20, 75, 102
DpnI GATC 2 cut(s) 81, 114
DpnII GATC 2 cut(s) 79, 112
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 1 cut(s) 86
FaiI YATR 6 cut(s) 84, 93, 132, 160, 162, 237
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 112
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 2 cut(s) 95, 217
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 5 cut(s) 14, 77, 116, 152, 221
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 42, 129
HpyF3I CTNAG 3 cut(s) 20, 75, 102
Hsp92II CATG 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 79, 112
LmnI GCTCC 2 cut(s) 4, 16
LpnPI CCDG 4 cut(s) 62, 184, 211, 227
MalI GATC 2 cut(s) 81, 114
MboI GATC 2 cut(s) 79, 112
MluCI AATT 4 cut(s) 28, 69, 88, 227
MnlI CCTC 2 cut(s) 46, 97
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
NdeII GATC 2 cut(s) 79, 112
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 95, 217
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 79, 112
ScrFI CCNGG 1 cut(s) 199
SetI ASST 5 cut(s) 9, 21, 200, 210, 268
Sse9I AATT 4 cut(s) 28, 69, 88, 227
SsiI CCGC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 42, 129
TasI AATT 4 cut(s) 28, 69, 88, 227
TfiI GAWTC 2 cut(s) 95, 217
TspDTI ATGAA 1 cut(s) 108
XapI RAATTY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.