Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19097622 .. 19099971

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAACCCCGAAGACTCGAAACAATCAGCAAAGATGGTTGTGTTCCTTCTCAAACTCATCTTCTTCGCATTGAGCTTCATATCGAACTTGGTTACGCGCTTGATCTTCTCTGCGACGGCTCATCTTCTCGTGTTATTGATCCAGGGATTCAGAACACCAGCCCAAGGCATCCATGGCACATTGCAACTAGTCACCGAGGTCTCGTGGAGAAAACAAAGACTTCTCTTGAATCGGTCGATGGGTTGCTTACTGATTATCCAGAGCATGTTAGCACACCAATTCCCGCTCCGAAAAGAGACGAGGTGTGTCTGAAACTGGAAGCAGCTTGTCTGAATCCATCTGATTGGAAAGTTCAAAAAGGGATTCTATGGCCTGTTTTTCCCGGAAAACTCCCCCACATACCTGTTGCTAGGCCCCCAGAAGTTTCAGCAGCAGAAAGCGCTGGCTTACCTATTGCCGGCCTAACAGCTCTCCAGGCTCTCACCCAAGCTGCAAACATCAAGCTTGATGGATCTGGCCAGCAGAAGAACATACTGATTACTGCTGCCTCTGGCGGTGTAGGCCACTATGCAGTCCAGCTAGCAAAGCTCGGAAACACTCATGTCACAGCCACTTGTGGAGCACGTAACATTGAATTGGTCAAAAGCTTGGGGGCAGATGAGGTTCTTGACTACAAGACCCCTGATGGGGCATCTCTCAAGAGCCCATCTGGTAGGAAATTTGATGCTGTGATCCACTGCGCATCAGCAGGCATTCCTTGGTCAACATTTGAGCCTAATTTGAGTGCAGAAGGGAAGGTTATAGACATTAGCATCACTCCTAGCGCCTTGCTTACTTTGGTACTAAACACAATCACCTTCTCGAAGAAGCAGCTGGTGCCGCTGCTCATGAATGCCGAGGCTGAGAGCCTGGAGTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACTGTGATTGACTCGAAGTATGCTCTAAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATAGATGGGCATGCTAATGGAAAGATCATTGTGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

350

Amino Acids

37.33

Weight (kDa)

6.83

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	186 - 311	2.3e-12	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	217 - 347	2.5e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	742
AccB1I	GGYRCC	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	285, 555, 881
AclWI	GGATC	3 cut(s)	134, 520, 727
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	1 cut(s)	843
AfeI	AGCGCT	1 cut(s)	442
AfiI	CCNNNNNNNGG	4 cut(s)	165, 458, 687, 688
AgsI	TTSAA	3 cut(s)	230, 356, 635
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	3 cut(s)	142, 474, 909
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	206, 291
AlwI	GGATC	3 cut(s)	134, 520, 727
Aor51HI	AGCGCT	1 cut(s)	442
AoxI	GGCC	5 cut(s)	371, 413, 460, 517, 562
ApeKI	GCWGC	6 cut(s)	323, 431, 491, 545, 871, 883
ApoI	RAATTY	1 cut(s)	719
AspLEI	GCGC	4 cut(s)	100, 443, 743, 827
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	185, 475, 847, 943
AsuNHI	GCTAGC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	707
BauI	CACGAG	2 cut(s)	129, 203
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	6 cut(s)	335, 443, 478, 532, 870, 883
BccI	CCATC	7 cut(s)	29, 233, 346, 503, 680, 715, 1007
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	3 cut(s)	144, 476, 911
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	206, 291
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	4 cut(s)	189, 411, 581, 822
BfoI	RGCGCY	2 cut(s)	444, 828
BisI	GCNGC	7 cut(s)	324, 432, 492, 546, 872, 881, 884
BlsI	GCNGC	7 cut(s)	325, 433, 493, 547, 873, 882, 885
Bme1390I	CCNGG	4 cut(s)	144, 384, 476, 911
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	3 cut(s)	416, 879, 1044
BmrFI	CCNGG	4 cut(s)	144, 384, 476, 911
BmsI	GCATC	6 cut(s)	178, 701, 715, 752, 822, 982
BmtI	GCTAGC	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	458, 932
BpuEI	CTTGAG	2 cut(s)	683, 932
BpuMI	CCSGG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	6 cut(s)	143, 164, 173, 196, 758, 897
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 458, 687, 688
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	144, 476, 911
BseDI	CCNNGG	6 cut(s)	143, 164, 173, 196, 758, 897
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	4 cut(s)	165, 458, 687, 688
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	1 cut(s)	321
BseXI	GCAGC	6 cut(s)	335, 443, 478, 532, 870, 883
BsgI	GTGCAG	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	5 cut(s)	373, 415, 462, 519, 564
BshNI	GGYRCC	1 cut(s)	877
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	384, 459
BslI	CCNNNNNNNGG	4 cut(s)	165, 458, 687, 688
BsmAI	GTCTC	2 cut(s)	206, 291
BsmBI	CGTCTC	1 cut(s)	291
BsmI	GAATGC	2 cut(s)	753, 898
BsnI	GGCC	5 cut(s)	373, 415, 462, 519, 564
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	625, 707
Bsp143I	GATC	5 cut(s)	103, 139, 512, 732, 1032
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	3 cut(s)	285, 555, 881
BspANI	GGCC	5 cut(s)	373, 415, 462, 519, 564
BspCNI	CTCAG	1 cut(s)	895
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	3 cut(s)	416, 879, 1044
BspOI	GCTAGC	1 cut(s)	584
BspPI	GGATC	3 cut(s)	134, 520, 727
BspT107I	GGYRCC	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	6 cut(s)	143, 164, 173, 196, 758, 897
BssMI	GATC	5 cut(s)	103, 139, 512, 732, 1032
BssSI	CACGAG	2 cut(s)	129, 203
BssT1I	CCWWGG	3 cut(s)	164, 173, 758
Bst2BI	CACGAG	2 cut(s)	129, 203
Bst2UI	CCWGG	3 cut(s)	144, 476, 911
Bst4CI	ACNGT	1 cut(s)	955
BstAPI	GCANNNNNTGC	1 cut(s)	877
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	6 cut(s)	445, 460, 521, 582, 751, 1020
BstDEI	CTNAG	3 cut(s)	903, 977, 1002
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	2 cut(s)	444, 828
BstHHI	GCGC	4 cut(s)	100, 443, 743, 827
BstKTI	GATC	5 cut(s)	106, 142, 515, 735, 1035
BstMAI	GTCTC	2 cut(s)	206, 291
BstMBI	GATC	5 cut(s)	103, 139, 512, 732, 1032
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	8 cut(s)	175, 440, 476, 561, 586, 877, 880, 992
BstNI	CCWGG	3 cut(s)	144, 476, 911
BstNSI	RCATGY	2 cut(s)	269, 1022
BstSCI	CCNGG	4 cut(s)	142, 382, 474, 909
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	6 cut(s)	335, 443, 478, 532, 870, 883
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	5 cut(s)	373, 415, 462, 519, 564
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	6 cut(s)	445, 460, 521, 582, 751, 1020
CciI	TCATGA	1 cut(s)	888
CfoI	GCGC	4 cut(s)	100, 443, 743, 827
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	5 cut(s)	174, 266, 602, 889, 1019
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	3 cut(s)	903, 977, 1002
DpnI	GATC	5 cut(s)	105, 141, 514, 734, 1034
DpnII	GATC	5 cut(s)	103, 139, 512, 732, 1032
EaeI	YGGCCR	1 cut(s)	517
Eco130I	CCWWGG	3 cut(s)	164, 173, 758
Eco24I	GRGCYC	1 cut(s)	707
Eco31I	GGTCTC	1 cut(s)	206
Eco47III	AGCGCT	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	1008
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRII	CCWGG	3 cut(s)	142, 474, 909
EcoT14I	CCWWGG	3 cut(s)	164, 173, 758
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	3 cut(s)	164, 173, 758
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	5 cut(s)	177, 269, 605, 892, 1022
FatI	CATG	5 cut(s)	173, 265, 601, 888, 1018
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	7 cut(s)	324, 432, 492, 546, 872, 881, 884
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	7 cut(s)	324, 432, 492, 546, 872, 881, 884
FspBI	CTAG	4 cut(s)	189, 411, 581, 822
FspI	TGCGCA	1 cut(s)	742
GlaI	GCGC	4 cut(s)	99, 442, 742, 826
GluI	GCNGC	7 cut(s)	324, 432, 492, 546, 872, 881, 884
GsuI	CTGGAG	2 cut(s)	458, 932
HaeII	RGCGCY	2 cut(s)	444, 828
HaeIII	GGCC	5 cut(s)	373, 415, 462, 519, 564
HapII	CCGG	2 cut(s)	384, 459
HhaI	GCGC	4 cut(s)	100, 443, 743, 827
Hin1II	CATG	5 cut(s)	177, 269, 605, 892, 1022
Hin6I	GCGC	4 cut(s)	98, 441, 741, 825
HinP1I	GCGC	4 cut(s)	98, 441, 741, 825
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	2 cut(s)	503, 646
HinfI	GANTC	6 cut(s)	15, 148, 230, 334, 364, 962
HpaII	CCGG	2 cut(s)	384, 459
HphI	GGTGA	4 cut(s)	185, 475, 847, 943
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	6 cut(s)	153, 291, 312, 333, 343, 593
Hpy188III	TCNNGA	7 cut(s)	227, 260, 668, 700, 862, 889, 949
Hpy8I	GTNNAC	1 cut(s)	765
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	6 cut(s)	57, 785, 790, 868, 928, 932
HpyCH4III	ACNGT	1 cut(s)	955
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	5 cut(s)	4, 185, 494, 572, 788
HpyF10VI	GCNNNNNNNGC	8 cut(s)	175, 440, 476, 561, 586, 877, 880, 992
HpyF3I	CTNAG	3 cut(s)	903, 977, 1002
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	5 cut(s)	177, 269, 605, 892, 1022
HspAI	GCGC	4 cut(s)	98, 441, 741, 825
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	103, 139, 512, 732, 1032
LmnI	GCTCC	2 cut(s)	292, 620
Lsp1109I	GCAGC	6 cut(s)	335, 443, 478, 532, 870, 883
LweI	GCATC	6 cut(s)	178, 701, 715, 752, 822, 982
MaeI	CTAG	4 cut(s)	189, 411, 581, 822
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	4 cut(s)	92, 191, 604, 626
MalI	GATC	5 cut(s)	105, 141, 514, 734, 1034
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	5 cut(s)	103, 139, 512, 732, 1032
MboII	GAAGA	8 cut(s)	24, 53, 56, 98, 117, 538, 877, 1001
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	625, 707
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	4 cut(s)	279, 635, 719, 778
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	2 cut(s)	9, 956
MnlI	CCTC	5 cut(s)	191, 295, 559, 655, 892
Mox20I	TGGCCA	1 cut(s)	519
MroNI	GCCGGC	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	2 cut(s)	924, 1048
MslI	CAYNNNNRTG	1 cut(s)	1023
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	874, 883
MspI	CCGG	2 cut(s)	384, 459
MspR9I	CCNGG	4 cut(s)	144, 384, 476, 911
Mva1269I	GAATGC	2 cut(s)	753, 898
MvaI	CCWGG	3 cut(s)	144, 476, 911
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	8 cut(s)	175, 440, 476, 561, 586, 877, 880, 992
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	5 cut(s)	103, 139, 512, 732, 1032
NgoMIV	GCCGGC	1 cut(s)	458
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	5 cut(s)	177, 269, 605, 892, 1022
NlaIV	GGNNCC	3 cut(s)	416, 879, 1044
NmeAIII	GCCGAG	1 cut(s)	922
NmuCI	GTSAC	2 cut(s)	191, 604
NsbI	TGCGCA	1 cut(s)	742
NspI	RCATGY	2 cut(s)	269, 1022
PaeI	GCATGC	1 cut(s)	1022
PagI	TCATGA	1 cut(s)	888
PctI	GAATGC	2 cut(s)	753, 898
PdiI	GCCGGC	1 cut(s)	460
PfeI	GAWTC	4 cut(s)	148, 230, 334, 364
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	7 cut(s)	325, 433, 493, 547, 873, 882, 885
PleI	GAGTC	2 cut(s)	9, 956
PpsI	GAGTC	2 cut(s)	9, 956
Ppu21I	YACGTR	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	142, 474, 909
PspGI	CCWGG	3 cut(s)	142, 474, 909
PspN4I	GGNNCC	3 cut(s)	416, 879, 1044
PspPI	GGNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	874
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	1 cut(s)	1023
SaqAI	TTAA	2 cut(s)	924, 1048
SatI	GCNGC	7 cut(s)	324, 432, 492, 546, 872, 881, 884
Sau3AI	GATC	5 cut(s)	103, 139, 512, 732, 1032
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	2 cut(s)	9, 956
ScrFI	CCNGG	4 cut(s)	144, 384, 476, 911
SduI	GDGCHC	2 cut(s)	625, 707
SfaNI	GCATC	6 cut(s)	178, 701, 715, 752, 822, 982
SmiMI	CAYNNNNRTG	1 cut(s)	1023
SmlI	CTYRAG	2 cut(s)	698, 947
SmoI	CTYRAG	2 cut(s)	698, 947
SpeI	ACTAGT	1 cut(s)	188
SphI	GCATGC	1 cut(s)	1022
Sse9I	AATT	4 cut(s)	279, 635, 719, 778
SsiI	CCGC	3 cut(s)	285, 555, 881
SspMI	CTAG	4 cut(s)	189, 411, 581, 822
StyD4I	CCNGG	4 cut(s)	142, 382, 474, 909
StyI	CCWWGG	3 cut(s)	164, 173, 758
TaaI	ACNGT	1 cut(s)	955
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	5 cut(s)	18, 84, 237, 863, 965
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	4 cut(s)	279, 635, 719, 778
TauI	GCSGC	1 cut(s)	883
TfiI	GAWTC	4 cut(s)	148, 230, 334, 364
Tru1I	TTAA	2 cut(s)	924, 1048
Tru9I	TTAA	2 cut(s)	924, 1048
TscAI	CASTG	1 cut(s)	743
TseFI	GTSAC	2 cut(s)	191, 604
TseI	GCWGC	6 cut(s)	323, 431, 491, 545, 871, 883
Tsp45I	GTSAC	2 cut(s)	191, 604
TspDTI	ATGAA	2 cut(s)	68, 905
TspRI	CASTG	1 cut(s)	743
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	2 cut(s)	269, 1022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	4 cut(s)	189, 411, 581, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.