Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19427682 .. 19427932

Gene Structure 251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCTCTTTCAGTTTTGTGCATCAATCAACTTCCTGGAATCGTCTACGACGTATTTTGGCCCTGAATGGGGCTATCGCCCGGTGCCAGGCAGTTTGAGGTATGGTACATTTCCCCGCAAGGCTGTTTACCGAGAAGCCAACTTTCTGGCTCAAGCTCTTCTGTGCAGAGATAAAGCTGGCTTTCTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0019538 GO:0019637 GO:0022008 GO:0030154 GO:0030176 GO:0030182 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051402 GO:0070997 GO:0071704 GO:0090407 GO:0097708 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi16

Protein Analysis

64

Amino Acids

7.24

Weight (kDa)

9.18

Isoelectric Point (pI)

11.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gpi16	PF04113	5 - 60	7.1e-06	Gpi16 subunit, GPI transamidase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	67, 68, 86
AjnI	CCWGG	2 cut(s)	33, 85
AluBI	AGCT	2 cut(s)	155, 176
AluI	AGCT	2 cut(s)	155, 176
AoxI	GGCC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	35, 87
BcnI	CCSGG	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	35, 80, 87
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	3 cut(s)	35, 80, 87
BmsI	GCATC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 68, 86
BseBI	CCWGG	2 cut(s)	35, 87
BseLI	CCNNNNNNNGG	3 cut(s)	67, 68, 86
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	67, 68, 86
BsnI	GGCC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	35, 87
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	35, 87
BstSCI	CCNGG	3 cut(s)	33, 78, 85
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	105
CviJI	RGCY	8 cut(s)	60, 72, 122, 137, 149, 155, 176, 180
CviKI_1	RGCY	8 cut(s)	60, 72, 122, 137, 149, 155, 176, 180
CviQI	GTAC	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	33, 85
FaiI	YATR	1 cut(s)	102
FauI	CCCGC	1 cut(s)	122
FblI	GTMKAC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	80
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	45, 127
Hpy8I	GTNNAC	2 cut(s)	45, 127
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	20, 165, 187
HpySE526I	ACGT	1 cut(s)	50
LguI	GCTCTTC	1 cut(s)	162
LpnPI	CCDG	8 cut(s)	20, 47, 72, 75, 93, 99, 131, 162
LweI	GCATC	1 cut(s)	29
MaeII	ACGT	1 cut(s)	50
MboII	GAAGA	1 cut(s)	149
MnlI	CCTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	190
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	35, 80, 87
MvaI	CCWGG	2 cut(s)	35, 87
NciI	CCSGG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	33, 85
PspGI	CCWGG	2 cut(s)	33, 85
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	35, 80, 87
SetI	ASST	4 cut(s)	53, 101, 157, 178
SfaNI	GCATC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	3 cut(s)	33, 78, 85
TaiI	ACGT	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	190
Tru9I	TTAA	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.