Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19693004 .. 19694539

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGCTACCTCCACGACAGACACGTGTCCCCCATCCGAGAAGCTCGCACCCACGCCGACGTCCTTGCCGTCTCGATCTACGTGAACCCGGGTCAGTCTCCCCCTCCGAAGACCTCTCCACATACCCGTCCGATTTCCACGGCGACATCCGGAAGCTCACCCAAATTCCCGGCGGCGTCGACGTCGTTTTTAACCCCCACAACCTATACGACTATGGAACTAACACGGACGCAAAAGCACCAGCGAGGAATGGGGCACGTGCGAGCGACGGCGGAGAAACGGGTGGAGAGGTTGGAAAAGGGGATGTGCGGGCGGAGCAGGCCGGTGTTTTTCAGAGGGGTGGCGACGGTGGTGAGCAAGCTGTTAAACATTGTGGAGCCGGATGTTGCGGTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATTCAGCGGATGGTTCGAGATCTTGATTTTTCTACGAGAGTGATAGGTTCTGAAATAGTGCGTGAAAATGACGGCCTGGCACTGAGTTCACGCAATGTGCGCCGCTCACCTGAAGAACGGGAAAAGGCACTTTCTATAAGCAAGTCATTGTCAAAAGCTAAATCTTCTGCAGAAAAGGGACAAATTAATTGTAAAGAGTTGAGAGACTTGGTCGTCGAAGCGATTTGTGAAGCCGGTGGAAGAGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

226

Amino Acids

24.99

Weight (kDa)

10.0

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	1 - 209	6.2e-53	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
AatII	GACGTC	2 cut(s)	63, 185
AccBSI	CCGCTC	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	8 cut(s)	173, 272, 309, 313, 389, 421, 433, 529
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	558
AcvI	CACGTG	2 cut(s)	25, 259
AcyI	GRCGYC	3 cut(s)	60, 176, 182
AflIII	ACRYGT	2 cut(s)	22, 24
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	44, 156, 361, 584
AluI	AGCT	4 cut(s)	44, 156, 361, 584
Alw26I	GTCTC	3 cut(s)	76, 102, 624
Ama87I	CYCGRG	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	2 cut(s)	320, 499
ApoI	RAATTY	1 cut(s)	164
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	528
AsuC2I	CCSGG	3 cut(s)	89, 90, 170
AsuHPI	GGTGA	3 cut(s)	150, 364, 525
AvaI	CYCGRG	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	258
BbrPI	CACGTG	2 cut(s)	25, 259
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	2 cut(s)	41, 430
BceAI	ACGGC	4 cut(s)	53, 156, 285, 514
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	3 cut(s)	89, 90, 170
BcoDI	GTCTC	3 cut(s)	76, 102, 624
BfmI	CTRYAG	1 cut(s)	594
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	2 cut(s)	174, 529
BlsI	GCNGC	2 cut(s)	175, 530
Bme1390I	CCNGG	4 cut(s)	89, 90, 170, 503
BmeT110I	CYCGRG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	4 cut(s)	89, 90, 170, 503
BoxI	GACNNNNGTC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	89, 90, 170
BsaAI	YACGTR	3 cut(s)	25, 82, 259
BsaHI	GRCGYC	3 cut(s)	60, 176, 182
BsaJI	CCNNGG	2 cut(s)	88, 138
BsaWI	WCCGGW	1 cut(s)	149
Bse118I	RCCGGY	2 cut(s)	322, 659
Bse3DI	GCAATG	2 cut(s)	422, 526
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	88, 138
BseGI	GGATG	5 cut(s)	33, 146, 309, 388, 441
BseMI	GCAATG	2 cut(s)	422, 526
BseMII	CTCAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	258
BshFI	GGCC	2 cut(s)	322, 501
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	6 cut(s)	89, 150, 170, 323, 380, 660
BslFI	GGGAC	2 cut(s)	13, 618
BsmAI	GTCTC	3 cut(s)	76, 102, 624
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	13, 618
BsnI	GGCC	2 cut(s)	322, 501
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	75, 445
BspACI	CCGC	8 cut(s)	173, 272, 309, 313, 389, 421, 433, 529
BspANI	GGCC	2 cut(s)	322, 501
BspCNI	CTCAG	1 cut(s)	501
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	422, 526
BsrFI	RCCGGY	2 cut(s)	322, 659
BssAI	RCCGGY	2 cut(s)	322, 659
BssECI	CCNNGG	2 cut(s)	88, 138
BssMI	GATC	2 cut(s)	75, 445
BssNI	GRCGYC	3 cut(s)	60, 176, 182
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	661
BstACI	GRCGYC	3 cut(s)	60, 176, 182
BstBAI	YACGTR	3 cut(s)	25, 82, 259
BstC8I	GCNNGC	5 cut(s)	46, 264, 311, 320, 359
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	5 cut(s)	33, 146, 309, 388, 441
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	2 cut(s)	78, 448
BstMAI	GTCTC	3 cut(s)	76, 102, 624
BstMBI	GATC	2 cut(s)	75, 445
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 319, 525
BstNI	CCWGG	1 cut(s)	503
BstPAI	GACNNNNGTC	1 cut(s)	25
BstSCI	CCNGG	4 cut(s)	87, 88, 168, 501
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	322, 501
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	5 cut(s)	33, 146, 309, 388, 441
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	5 cut(s)	46, 264, 311, 320, 359
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	2 cut(s)	322, 659
Cfr9I	CCCGGG	1 cut(s)	88
CseI	GACGC	2 cut(s)	165, 238
CviJI	RGCY	9 cut(s)	6, 44, 156, 322, 361, 379, 501, 584, 659
CviKI_1	RGCY	9 cut(s)	6, 44, 156, 322, 361, 379, 501, 584, 659
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	2 cut(s)	77, 447
DpnII	GATC	2 cut(s)	75, 445
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
EciI	GGCGGA	3 cut(s)	287, 328, 436
Eco57I	CTGAAG	1 cut(s)	558
Eco72I	CACGTG	2 cut(s)	25, 259
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	76
FaiI	YATR	4 cut(s)	123, 207, 215, 563
FaqI	GGGAC	2 cut(s)	13, 618
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	174, 529
FokI	GGATG	5 cut(s)	20, 133, 316, 395, 448
Fsp4HI	GCNGC	2 cut(s)	174, 529
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	2 cut(s)	174, 529
HaeIII	GGCC	2 cut(s)	322, 501
HapII	CCGG	6 cut(s)	89, 150, 170, 323, 380, 660
HgaI	GACGC	2 cut(s)	165, 238
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	3 cut(s)	60, 176, 182
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	669
HpaII	CCGG	6 cut(s)	89, 150, 170, 323, 380, 660
HphI	GGTGA	3 cut(s)	150, 364, 525
Hpy166II	GTNNAC	3 cut(s)	85, 180, 515
Hpy188I	TCNGA	5 cut(s)	38, 108, 132, 335, 478
Hpy188III	TCNNGA	4 cut(s)	73, 150, 443, 449
Hpy8I	GTNNAC	3 cut(s)	85, 180, 515
Hpy99I	CGWCG	7 cut(s)	62, 181, 184, 187, 271, 349, 644
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	5 cut(s)	24, 60, 81, 182, 258
HpyCH4V	TGCA	1 cut(s)	596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 319, 525
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	5 cut(s)	24, 60, 81, 182, 258
Hsp92I	GRCGYC	3 cut(s)	60, 176, 182
HspAI	GCGC	1 cut(s)	526
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	75, 445
LmnI	GCTCC	2 cut(s)	315, 376
MaeII	ACGT	5 cut(s)	24, 60, 81, 182, 258
MalI	GATC	2 cut(s)	77, 447
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	2 cut(s)	75, 445
MboII	GAAGA	5 cut(s)	121, 412, 551, 582, 678
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	164, 609, 613
MlyI	GAGTC	1 cut(s)	678
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	20, 114, 124, 239, 282, 329
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	3 cut(s)	191, 365, 612
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	6 cut(s)	89, 150, 170, 323, 380, 660
MspR9I	CCNGG	4 cut(s)	89, 90, 170, 503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	315, 319, 525
NciI	CCSGG	3 cut(s)	89, 90, 170
NdeII	GATC	2 cut(s)	75, 445
NlaIV	GGNNCC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 66
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	175, 530
PleI	GAGTC	1 cut(s)	677
PmaCI	CACGTG	2 cut(s)	25, 259
PmlI	CACGTG	2 cut(s)	25, 259
PpsI	GAGTC	1 cut(s)	677
Ppu21I	YACGTR	3 cut(s)	25, 82, 259
PshAI	GACNNNNGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	501
PspCI	CACGTG	2 cut(s)	25, 259
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	445
PsyI	GACNNNGTC	1 cut(s)	635
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	191, 365, 612
SatI	GCNGC	2 cut(s)	174, 529
Sau3AI	GATC	2 cut(s)	75, 445
SchI	GAGTC	1 cut(s)	678
ScrFI	CCNGG	4 cut(s)	89, 90, 170, 503
SduI	GDGCHC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	594
SgrDI	CGTCGACG	1 cut(s)	178
SmaI	CCCGGG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	164, 609, 613
SsiI	CCGC	8 cut(s)	173, 272, 309, 313, 389, 421, 433, 529
StyD4I	CCNGG	4 cut(s)	87, 88, 168, 501
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	5 cut(s)	27, 63, 84, 185, 261
TaqI	TCGA	5 cut(s)	74, 179, 442, 642, 672
TasI	AATT	3 cut(s)	164, 609, 613
TauI	GCSGC	2 cut(s)	176, 531
Tru1I	TTAA	3 cut(s)	191, 365, 612
Tru9I	TTAA	3 cut(s)	191, 365, 612
TscAI	CASTG	1 cut(s)	513
TspGWI	ACGGA	1 cut(s)	241
TspMI	CCCGGG	1 cut(s)	88
TspRI	CASTG	1 cut(s)	513
Tth111I	GACNNNGTC	1 cut(s)	635
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	179
ZraI	GACGTC	2 cut(s)	61, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.