pycom05g16450

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
19707891 .. 19710769
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1203 bp
ATGGATAAGCGCGGAAAAGAAATTGTCTTGAAGGCAATGGGACAGGCAATTAACAAGACAGTTGCAATTGCTGAAATTATAAAGAAGAGAATTTCCTGGTTGCATCAGGATACCGCCATCAGCTCTGTAAGCATAACTGATGTGTTTGAACCAATGGAAGAAGGTCTTCTCCCCGTGGAAACGACTCGTCATGTCTCAATGATTTCAATCACATTATCAACAAAGGAGCTAAACACAAACTCTCCTGGGTATCAAGCCCCATATGCTGCGGATCAATCAAAGCCACAGCTGAATTACCAACAGCAGCAGCAACCAAAGCAAGCACGTGTTCCTTACAATGCTGTTAATGAAGATTCGTATGGCCGGGGACGGGGACGGGGACGTGGTAGAGGAAGAGGCCGGAATTGGGGCAGGGGAGGAGGTTATGACAATTATCAAGGCGGATATGGGAACTATCAAGGTGGAAACCATCAAGGTGGATATGGGAACTATCAAGGTGGCTATAGAAACTATCAAGATAATGATGGCTATTCAAATCGGGGACAAGGTGGTGGACGTGGTAGAGGTTGGGGTAACCGTGGTGCTGGTTATGAAAGGAATGCTGGTGGCTATGAAAGGAATGGTGGTGACTATGAAAGGGGTGCTGGTGGCTATGAAAGGGGTTCTGGTGGAGGTTACGAAAGAGGTGGTGCTGGTGGGGGTTACGAAAGGGGTGGTTCTGGTGGGGGTTACGAAAGGGGTGGTGCTGGTGGGGGTTATGAAAGAGGTGGTGCTGGTGGGGATTACGAAAGGGGTGGTGCTGGTGGGGGTTATGAAAGAGCTGGTGAAGGGGGTGGTGCTGGTGGGGGTTATGAAAGAGGTGGTGAAAGAGGTGGTGCTGGTGGGGGTTATGAGATAGATGGTGCTGGTGGAGGTTATGAGAGAGGCGATGCTGGCAGGTATCAGAGACGTGGTGCTGGTGGGTATGAGAGGCGCGGTGCTCGCGGGTATGAGAGAGGCGGTGCTGGTGGATATGAGCGAGGTGCTGGTGGATACGAGCGAGGTGCTGGTGGTGGATACGAGCGAGGTGCTGGTGGTGGATACGAGAGAGGTGCTGGTGGATATGAACGAGGTGGCAGAGGTGGAGGGGGCAGAGGGTACAACCGGGGAAAAGGACGGACAGGTGAGCGCACAAGGGGTGGTGGAACTGGAAACCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

401

Amino Acids

41.43

Weight (kDa)

9.63

Isoelectric Point (pI)

19.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpp20 PF12328 3 - 70 1.1e-06 Rpp20 subunit of nuclear RNase MRP and P
Alba PF01918 6 - 38 3.9e-08 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 927
AccII CGCG 3 cut(s) 12, 975, 984
AciI CCGC 7 cut(s) 12, 114, 269, 441, 975, 984, 999
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 1 cut(s) 90
AcvI CACGTG 1 cut(s) 326
AfaI GTAC 1 cut(s) 1139
AfiI CCNNNNNNNGG 2 cut(s) 370, 406
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 4 cut(s) 31, 149, 207, 534
AjiI CACGTC 3 cut(s) 383, 557, 950
AjnI CCWGG 2 cut(s) 95, 244
AluBI AGCT 4 cut(s) 123, 229, 289, 821
AluI AGCT 4 cut(s) 123, 229, 289, 821
Alw21I GWGCWC 1 cut(s) 982
Alw26I GTCTC 2 cut(s) 199, 940
AlwI GGATC 1 cut(s) 279
AoxI GGCC 2 cut(s) 361, 397
ApeKI GCWGC 3 cut(s) 266, 304, 307
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 3 cut(s) 12, 975, 1170
AsuC2I CCSGG 2 cut(s) 365, 1145
AsuHPI GGTGA 4 cut(s) 638, 836, 875, 1175
BbrPI CACGTG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 982
BbvI GCAGC 3 cut(s) 253, 316, 319
BccI CCATC 4 cut(s) 125, 477, 518, 893
BcgI CGANNNNNNTGC 6 cut(s) 1025, 1049, 1059, 1073, 1083, 1107
BciT130I CCWGG 2 cut(s) 97, 246
BciVI GTATCC 4 cut(s) 103, 1025, 1049, 1073
BcnI CCSGG 2 cut(s) 365, 1145
BcoDI GTCTC 2 cut(s) 199, 940
BfmI CTRYAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 927
BfuI GTATCC 4 cut(s) 103, 1025, 1049, 1073
BisI GCNGC 3 cut(s) 267, 305, 308
BlsI GCNGC 3 cut(s) 268, 306, 309
Bme1390I CCNGG 4 cut(s) 97, 246, 365, 1145
BmgBI CACGTC 3 cut(s) 383, 557, 950
BmrFI CCNGG 4 cut(s) 97, 246, 365, 1145
BmsI GCATC 2 cut(s) 112, 919
BpiI GAAGAC 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 365, 1145
BsaAI YACGTR 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 174, 245, 364, 577, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 406
Bse1I ACTGG 1 cut(s) 1192
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 2 cut(s) 97, 246
BseDI CCNNGG 5 cut(s) 174, 245, 364, 577, 1144
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 370, 406
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 1192
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 3 cut(s) 253, 316, 319
Bsh1236I CGCG 3 cut(s) 12, 975, 984
BshFI GGCC 2 cut(s) 363, 399
BsiHKAI GWGCWC 1 cut(s) 982
BsiSI CCGG 3 cut(s) 364, 400, 1144
BslFI GGGAC 5 cut(s) 54, 381, 387, 393, 555
BslI CCNNNNNNNGG 2 cut(s) 370, 406
BsmAI GTCTC 2 cut(s) 199, 940
BsmBI CGTCTC 1 cut(s) 940
BsmFI GGGAC 5 cut(s) 54, 381, 387, 393, 555
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 363, 399
Bsp1286I GDGCHC 1 cut(s) 982
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 7 cut(s) 12, 114, 269, 441, 975, 984, 999
BspANI GGCC 2 cut(s) 363, 399
BspFNI CGCG 3 cut(s) 12, 975, 984
BspMI ACCTGC 1 cut(s) 927
BspPI GGATC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 1192
BssECI CCNNGG 5 cut(s) 174, 245, 364, 577, 1144
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 97, 246
Bst4CI ACNGT 2 cut(s) 61, 578
Bst6I CTCTTC 2 cut(s) 80, 388
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 321, 934, 982
BstDSI CCRYGG 2 cut(s) 174, 577
BstEII GGTNACC 1 cut(s) 572
BstFNI CGCG 3 cut(s) 12, 975, 984
BstHHI GCGC 3 cut(s) 12, 975, 1170
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 2 cut(s) 199, 940
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 5 cut(s) 129, 263, 316, 933, 981
BstNI CCWGG 2 cut(s) 97, 246
BstPI GGTNACC 1 cut(s) 572
BstSCI CCNGG 4 cut(s) 95, 244, 363, 1143
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 3 cut(s) 12, 975, 984
BstV1I GCAGC 3 cut(s) 253, 316, 319
BstV2I GAAGAC 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 476
BsuI GTATCC 4 cut(s) 103, 1025, 1049, 1073
BsuRI GGCC 2 cut(s) 363, 399
BtgI CCRYGG 2 cut(s) 174, 577
BtgZI GCGATG 1 cut(s) 942
BtrI CACGTC 3 cut(s) 383, 557, 950
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 3 cut(s) 321, 934, 982
CfoI GCGC 3 cut(s) 12, 975, 1170
Csp6I GTAC 1 cut(s) 1138
CviAII CATG 1 cut(s) 191
CviQI GTAC 1 cut(s) 1138
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 80, 388
EarI CTCTTC 2 cut(s) 80, 388
EciI GGCGGA 1 cut(s) 456
Eco72I CACGTG 1 cut(s) 326
Eco91I GGTNACC 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 572
EcoRII CCWGG 2 cut(s) 95, 244
Esp3I CGTCTC 1 cut(s) 940
FaeI CATG 1 cut(s) 194
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 5 cut(s) 54, 381, 387, 393, 555
FatI CATG 1 cut(s) 190
FauI CCCGC 1 cut(s) 977
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 267, 305, 308
Fsp4HI GCNGC 3 cut(s) 267, 305, 308
GlaI GCGC 3 cut(s) 11, 974, 1169
GluI GCNGC 3 cut(s) 267, 305, 308
HaeIII GGCC 2 cut(s) 363, 399
HapII CCGG 3 cut(s) 364, 400, 1144
HhaI GCGC 3 cut(s) 12, 975, 1170
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 3 cut(s) 10, 973, 1168
HinP1I GCGC 3 cut(s) 10, 973, 1168
HinfI GANTC 2 cut(s) 184, 353
HpaII CCGG 3 cut(s) 364, 400, 1144
HphI GGTGA 4 cut(s) 638, 836, 875, 1175
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 1 cut(s) 945
Hpy188III TCNNGA 3 cut(s) 28, 107, 515
Hpy8I GTNNAC 1 cut(s) 554
HpyAV CCTTC 3 cut(s) 25, 155, 821
HpyCH4III ACNGT 2 cut(s) 61, 578
HpyCH4IV ACGT 4 cut(s) 325, 382, 556, 949
HpyCH4V TGCA 2 cut(s) 65, 103
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 263, 316, 933, 981
HpySE526I ACGT 4 cut(s) 325, 382, 556, 949
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 3 cut(s) 10, 973, 1168
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 3 cut(s) 253, 316, 319
LweI GCATC 2 cut(s) 112, 919
MaeII ACGT 4 cut(s) 325, 382, 556, 949
MaeIII GTNAC 5 cut(s) 572, 626, 674, 701, 728
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 5 cut(s) 97, 158, 170, 362, 405
MfeI CAATTG 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 982
MluCI AATT 8 cut(s) 21, 48, 66, 75, 90, 292, 403, 430
MlyI GAGTC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 2 cut(s) 51, 345
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 3 cut(s) 364, 400, 1144
MspR9I CCNGG 4 cut(s) 97, 246, 365, 1145
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 97, 246
MvnI CGCG 3 cut(s) 12, 975, 984
MwoI GCNNNNNNNGC 5 cut(s) 129, 263, 316, 933, 981
NciI CCSGG 2 cut(s) 365, 1145
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 271
NlaIII CATG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 626
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 3 cut(s) 268, 306, 309
PleI GAGTC 1 cut(s) 178
PmaCI CACGTG 1 cut(s) 326
PmlI CACGTG 1 cut(s) 326
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 326
PsiI TTATAA 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 95, 244
PspCI CACGTG 1 cut(s) 326
PspEI GGTNACC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 95, 244
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 1 cut(s) 1139
RsaNI GTAC 1 cut(s) 1138
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 51, 345
SatI GCNGC 3 cut(s) 267, 305, 308
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 4 cut(s) 97, 246, 365, 1145
SduI GDGCHC 1 cut(s) 982
SfaNI GCATC 2 cut(s) 112, 919
SfcI CTRYAG 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 8 cut(s) 21, 48, 66, 75, 90, 292, 403, 430
SsiI CCGC 7 cut(s) 12, 114, 269, 441, 975, 984, 999
StyD4I CCNGG 4 cut(s) 95, 244, 363, 1143
TaaI ACNGT 2 cut(s) 61, 578
TaiI ACGT 4 cut(s) 328, 385, 559, 952
TasI AATT 8 cut(s) 21, 48, 66, 75, 90, 292, 403, 430
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 51, 345
Tru9I TTAA 2 cut(s) 51, 345
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 3 cut(s) 266, 304, 307
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 9 cut(s) 363, 606, 627, 648, 669, 774, 828, 867, 1119
TspGWI ACGGA 1 cut(s) 1171
XapI RAATTY 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.