pycom05g16830

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
20115679 .. 20116234
556 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGACTCAAGGACTCAACAGGCAACTCATTTCATGTAAAAATATAACTTATAAAAAACTGCTTGGCCTCAATTCCAATCTTGTTCAGTCTCGGCAGCCAAACGAGTCGAGTCTTTCAATCAATATTTGGTTAGCCTTTGAAAGTAATGTATTTGCTTCATCTTTGACAGGTTTTGTGACATCAAAAGTGGCATGTTGTGGGCAAGGACGCTTTAATGGGTTGGGACAGTGCAATCCAACGTCAAACCTGTGCCCAAACAGGGATCTCTATGCTTTCCATCCAACTGAGAAAGCAAACAGGCTCATTGTGAAGCAGATTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.82

Weight (kDa)

9.55

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AclWI GGATC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 117, 140
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 66
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 270
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 233
CseI GACGC 1 cut(s) 216
CviAII CATG 3 cut(s) 33, 192, 321
CviJI RGCY 4 cut(s) 66, 97, 134, 301
CviKI_1 RGCY 4 cut(s) 66, 97, 134, 301
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
FaeI CATG 3 cut(s) 36, 195, 324
FaiI YATR 6 cut(s) 34, 44, 51, 193, 270, 322
FaqI GGGAC 1 cut(s) 237
FatI CATG 3 cut(s) 32, 191, 320
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 66
HgaI GACGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 36, 195, 324
HinfI GANTC 4 cut(s) 4, 12, 104, 109
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 3 cut(s) 36, 195, 324
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 4, 153, 244, 260, 283
Lsp1109I GCAGC 1 cut(s) 106
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 1 cut(s) 70
MlyI GAGTC 3 cut(s) 6, 113, 118
MmeI TCCRAC 2 cut(s) 260, 305
MnlI CCTC 1 cut(s) 77
MseI TTAA 1 cut(s) 213
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 36, 195, 324
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 1 cut(s) 195
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 3 cut(s) 6, 112, 117
PpsI GAGTC 3 cut(s) 6, 112, 117
PsiI TTATAA 1 cut(s) 51
PsuI RGATCY 1 cut(s) 262
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 3 cut(s) 6, 113, 118
SduI GDGCHC 1 cut(s) 254
SetI ASST 3 cut(s) 172, 242, 249
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 70
SspI AATATT 1 cut(s) 124
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 70
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 21, 147
TspRI CASTG 1 cut(s) 233
XceI RCATGY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.