pycom05g16910

Protein LOW PSII ACCUMULATION 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
20179021 .. 20179786
766 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGCTGCTAAACACTGCCGTTTCCAGGGGAAGTAAAATAAGACTGGCTGTAATTACCACCATTTGGGCTGTGGGAGGTGGCAGTATTGTCTTCATCCAAATACGGCCTCCCAAGAAACCATTGCCAAACTCTAAAAAGCAACACAAGAACTCTGAATTCAAGCGGTGGCCAAGGCTTCTGTTGCAAACTCTCCCTTACACATCCTCAAACCTCGAAATCACACTCACTACAAACTCAGCAGTGGAATCAGAACCGATCCTCTGGTCATTCTCTTGTACAAATGCACCATTTCTCACTCTGCAGACCTCAAAGCATAAGTCTTCAACCATCACATGCTTTGCAACTGATAAGCAAACTTCTCCTACTGAAATCAGGAACTATAATTGGTTAGTCTTCAACAAGGATCACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

10.13

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 63
AciI CCGC 1 cut(s) 163
AclWI GGATC 2 cut(s) 250, 411
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 24, 63
AgsI TTSAA 3 cut(s) 160, 324, 397
AjnI CCWGG 1 cut(s) 23
AlwI GGATC 2 cut(s) 250, 411
AoxI GGCC 2 cut(s) 104, 167
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
BalI TGGCCA 1 cut(s) 169
BbsI GAAGAC 3 cut(s) 82, 312, 385
BccI CCATC 1 cut(s) 335
BceAI ACGGC 2 cut(s) 2, 119
BciT130I CCWGG 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BpiI GAAGAC 3 cut(s) 82, 312, 385
BsaJI CCNNGG 2 cut(s) 24, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 63
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 24, 170
BseGI GGATG 2 cut(s) 93, 200
BseLI CCNNNNNNNGG 2 cut(s) 24, 63
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 48
BshFI GGCC 2 cut(s) 106, 169
BslI CCNNNNNNNGG 2 cut(s) 24, 63
BsnI GGCC 2 cut(s) 106, 169
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 255, 403
BspACI CCGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 106, 169
BspCNI CTCAG 1 cut(s) 248
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 250, 411
BsrDI GCAATG 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 275
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 24, 170
BssMI GATC 2 cut(s) 255, 403
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 25
BstAUI TGTACA 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 2 cut(s) 93, 200
BstKTI GATC 2 cut(s) 258, 406
BstMBI GATC 2 cut(s) 255, 403
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 299
BstV2I GAAGAC 3 cut(s) 82, 312, 385
BsuRI GGCC 2 cut(s) 106, 169
BtsCI GGATG 2 cut(s) 93, 200
BtsI GCAGTG 2 cut(s) 12, 246
BtsIMutI CAGTG 2 cut(s) 12, 246
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 333
CviJI RGCY 5 cut(s) 47, 68, 106, 169, 175
CviKI_1 RGCY 5 cut(s) 47, 68, 106, 169, 175
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 235
DpnI GATC 2 cut(s) 257, 405
DpnII GATC 2 cut(s) 255, 403
EaeI YGGCCR 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 336
FaiI YATR 3 cut(s) 315, 334, 381
FatI CATG 1 cut(s) 332
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 80, 187
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 106, 169
Hin1II CATG 1 cut(s) 336
HinfI GANTC 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 154, 250
Hpy188III TCNNGA 1 cut(s) 373
HpyCH4V TGCA 4 cut(s) 184, 284, 301, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 1 cut(s) 336
Kzo9I GATC 2 cut(s) 255, 403
LpnPI CCDG 5 cut(s) 10, 29, 37, 247, 358
MalI GATC 2 cut(s) 257, 405
MboI GATC 2 cut(s) 255, 403
MboII GAAGA 3 cut(s) 82, 312, 385
MlsI TGGCCA 1 cut(s) 169
MluCI AATT 3 cut(s) 51, 155, 382
MluNI TGGCCA 1 cut(s) 169
MnlI CCTC 6 cut(s) 68, 117, 214, 221, 269, 316
Mox20I TGGCCA 1 cut(s) 169
MscI TGGCCA 1 cut(s) 169
Msp20I TGGCCA 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 2 cut(s) 255, 403
NlaIII CATG 1 cut(s) 336
NspI RCATGY 1 cut(s) 336
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PstI CTGCAG 1 cut(s) 303
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 255, 403
ScrFI CCNGG 1 cut(s) 25
SetI ASST 3 cut(s) 79, 213, 308
SfcI CTRYAG 1 cut(s) 299
Sse9I AATT 3 cut(s) 51, 155, 382
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 213
TasI AATT 3 cut(s) 51, 155, 382
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 2 cut(s) 19, 246
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 82
TspRI CASTG 2 cut(s) 19, 246
Van91I CCANNNNNTGG 1 cut(s) 63
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.