pycom05g17270

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
20476231 .. 20476578
348 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGAGGGAGGAGGTCATAAGCCTTATTCCAAGTCTGATATATGCCGATCCCCGTTCTAAGTTGGGGATTTTTAGAGATGCCTTTGATGTTTCTGTACAGGCCGTCATTGACAAAGTTACAAAGTTGAGGAAGGACATAATCGAGGGTCATACAGATGATAACTTCATCGAAGAAAACAGTTGGAAGTATGCTTTGTTGGAGGAGGGACAACGTGAGGTAGGAGCTCACGAATGGGATCCTTTCTTCTCGAAGCCAAAGGATGGTAATGGTGATTCTGTTGATACATCTGCCGAAGCTGCGAAAAACTCGTGGCATAATGAACAACGACATCAATCATCGGTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000271 GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0005996 GO:0006004 GO:0006073 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009863 GO:0009969 GO:0009987 GO:0010033 GO:0010256 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0019318 GO:0019319 GO:0023052 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0032870 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0035690 GO:0040007 GO:0042221 GO:0042353 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

116

Amino Acids

13.12

Weight (kDa)

5.02

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 260
AclWI GGATC 3 cut(s) 41, 230, 243
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 224, 296
AluI AGCT 2 cut(s) 224, 296
Alw21I GWGCWC 1 cut(s) 226
AlwI GGATC 3 cut(s) 41, 230, 243
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 226
BauI CACGAG 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 86
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 260
BseRI GAGGAG 2 cut(s) 23, 215
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 226
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 2 cut(s) 46, 235
BspANI GGCC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 3 cut(s) 41, 230, 243
BsrGI TGTACA 1 cut(s) 94
BssMI GATC 2 cut(s) 46, 235
BssSI CACGAG 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 49, 238
BstMBI GATC 2 cut(s) 46, 235
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 265
Csp6I GTAC 1 cut(s) 95
CviJI RGCY 5 cut(s) 21, 101, 224, 253, 296
CviKI_1 RGCY 5 cut(s) 21, 101, 224, 253, 296
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 48, 237
DpnII GATC 2 cut(s) 46, 235
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 226
FaiI YATR 7 cut(s) 17, 40, 42, 137, 150, 189, 315
FaqI GGGAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 101
HinfI GANTC 1 cut(s) 272
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 2 cut(s) 227, 247
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 211
Kzo9I GATC 2 cut(s) 46, 235
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 48, 237
MboI GATC 2 cut(s) 46, 235
MboII GAAGA 2 cut(s) 182, 235
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 226
MmeI TCCRAC 2 cut(s) 161, 177
MnlI CCTC 6 cut(s) 4, 120, 136, 193, 196, 208
MslI CAYNNNNRTG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 46, 235
NlaIV GGNNCC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 226
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 46, 235
SduI GDGCHC 1 cut(s) 226
SetI ASST 5 cut(s) 15, 214, 219, 226, 298
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 9 cut(s) 42, 63, 110, 154, 224, 239, 259, 319, 321
SmiMI CAYNNNNRTG 1 cut(s) 153
SstI GAGCTC 1 cut(s) 226
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 141, 168, 248
TaqII GACCGA 1 cut(s) 328
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 1 cut(s) 272
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 154, 333
Van91I CCANNNNNTGG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.