pycom05g17580

Exosome complex exonuclease RRP46

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
20739130 .. 20739997
868 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGATTTCTACGGGTTTTTTTTTTCTCTTTCTATTTTGTATTTTAAATACATTTAAGGTTGAAGGAGTCAACGATGGAATTCTGGACTCCGAAGAGAATAAGCCTGGAAAAATGAAACGGGAATATGAGATGATATTGAAGAAAGCCTTGCAAAGCGTCTGCCTGCTTAATTCAGATGCCACAACTTCGGTTATTGTTTAG

Protein Analysis

67

Amino Acids

7.44

Weight (kDa)

5.18

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 78
AgsI TTSAA 2 cut(s) 62, 139
AjnI CCWGG 1 cut(s) 103
ApoI RAATTY 1 cut(s) 78
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 166
BseBI CCWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 164
CseI GACGC 1 cut(s) 145
CviJI RGCY 2 cut(s) 103, 146
CviKI_1 RGCY 2 cut(s) 103, 146
DraI TTTAAA 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 103
FaiI YATR 1 cut(s) 126
FalI AAGNNNNNCTT 2 cut(s) 131, 163
HgaI GACGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 2 cut(s) 66, 86
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 91, 175
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 151
LpnPI CCDG 4 cut(s) 68, 90, 117, 176
LweI GCATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 104, 151
MluCI AATT 2 cut(s) 78, 169
MlyI GAGTC 2 cut(s) 75, 80
MseI TTAA 3 cut(s) 44, 54, 168
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
PleI GAGTC 2 cut(s) 74, 80
PpsI GAGTC 2 cut(s) 74, 80
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
SaqAI TTAA 3 cut(s) 44, 54, 168
SchI GAGTC 2 cut(s) 75, 80
ScrFI CCNGG 1 cut(s) 105
SetI ASST 1 cut(s) 60
SfaNI GCATC 1 cut(s) 166
SgeI CNNG 7 cut(s) 24, 95, 116, 117, 131, 160, 175
Sse9I AATT 2 cut(s) 78, 169
StyD4I CCNGG 1 cut(s) 103
TasI AATT 2 cut(s) 78, 169
Tru1I TTAA 3 cut(s) 44, 54, 168
Tru9I TTAA 3 cut(s) 44, 54, 168
TspDTI ATGAA 1 cut(s) 128
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.