pycom05g17690

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
20830827 .. 20831645
819 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGGGGAACTGCCACTGTCCTTTTATTGGTCAAATCCTTCCTTCTCTGTTCTCCAATTGGACGAAATTGGTTTCTTTGTTCCTTCCTGAGAATAGCTTCAGCGGAACCATTTCAGCAGAAATTGGGCAGTTGACACAATTGCAGGATCTAAGCCTTTATTCCAACAAATTCAACGGAGAGATTCCTCAGAGTCTAGGCAACTTGAGTCTGCTTCAAGAACTCCTTTTGTCCGGTAACAGCTTCACAGGAGAGATTCCTCAGAGTCTAGGCAAATTGACTCTGCTTCAGGGACTCTATTTGTCCTATAACCACTTGACAGGAGAGATTCCTCAGAGTCTAGGCAAATTGACTCAGCTTCATACACTCGATTTTTGTTCGCTAACAACTTCACAGGAGAGATTCCTCAGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

138

Amino Acids

15.11

Weight (kDa)

5.45

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 38 - 134 6.6e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 82, 269
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 172, 215
AluBI AGCT 3 cut(s) 96, 240, 355
AluI AGCT 3 cut(s) 96, 240, 355
AlwI GGATC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 2 cut(s) 95, 109
BfaI CTAG 4 cut(s) 194, 266, 338, 412
BmiI GGNNCC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 5 cut(s) 78, 200, 272, 344, 365
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 5 cut(s) 79, 199, 271, 343, 364
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 153
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 17
BstDEI CTNAG 7 cut(s) 87, 149, 186, 258, 330, 351, 404
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 13
CviJI RGCY 4 cut(s) 96, 153, 240, 355
CviKI_1 RGCY 4 cut(s) 96, 153, 240, 355
DdeI CTNAG 7 cut(s) 87, 149, 186, 258, 330, 351, 404
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 82, 269
FaiI YATR 2 cut(s) 306, 360
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 303
FspBI CTAG 4 cut(s) 194, 266, 338, 412
HapII CCGG 1 cut(s) 231
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 4 cut(s) 189, 261, 333, 407
Hpy188III TCNNGA 2 cut(s) 86, 215
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 47, 51, 92
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 142
HpyF3I CTNAG 7 cut(s) 87, 149, 186, 258, 330, 351, 404
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 99, 128, 231, 244, 272, 303, 377
MaeI CTAG 4 cut(s) 194, 266, 338, 412
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MfeI CAATTG 2 cut(s) 55, 137
MflI RGATCY 1 cut(s) 145
MluCI AATT 7 cut(s) 55, 65, 120, 137, 167, 272, 344
MlyI GAGTC 7 cut(s) 199, 214, 271, 271, 285, 343, 343
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 195, 267, 339, 413
MroXI GAANNNNTTC 2 cut(s) 95, 109
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 1 cut(s) 231
MunI CAATTG 2 cut(s) 55, 137
NdeII GATC 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 95, 109
PfeI GAWTC 4 cut(s) 181, 253, 325, 399
PleI GAGTC 7 cut(s) 198, 213, 270, 271, 285, 342, 343
PpsI GAGTC 7 cut(s) 198, 213, 270, 271, 285, 342, 343
PspN4I GGNNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 145
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 7 cut(s) 199, 214, 271, 271, 285, 343, 343
SetI ASST 3 cut(s) 98, 242, 357
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 7 cut(s) 55, 65, 120, 137, 167, 272, 344
SsiI CCGC 1 cut(s) 102
SspMI CTAG 4 cut(s) 194, 266, 338, 412
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 366
TasI AATT 7 cut(s) 55, 65, 120, 137, 167, 272, 344
TfiI GAWTC 4 cut(s) 181, 253, 325, 399
TscAI CASTG 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 20
XapI RAATTY 1 cut(s) 167
XmnI GAANNNNTTC 2 cut(s) 95, 109
XspI CTAG 4 cut(s) 194, 266, 338, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.