pycom05g17970

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
21054952 .. 21055926
975 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGAAGAGGAGGAGTAGTGAAACCGGGAAGAGGGGTAAACCTTCTTCGAAAGTTGGAAAGGTACTGAAGTGTTTCCGTTCAGGAGAGCAATTAAGAACGGCAGATGAAATGGTTCCTCCAGAAAATGAATCCCTTGCAACCAAGGATCATAAATCAAGTGAATCTTCATCGCGAGCTGGGGAGGCTACAAAGAAACTGAACGCTGGCAATATAGAAGAAGCTGAATCATCTCTGCGTGAGAGTGGTTGTTTGAACTATGAGGAAGCAAGAGCGCTATTAGGAAGATACAAATATCAGAAAGGAAACATAGAAGCTGCTTTACATGTATTTGGAGGAATAGATATTGGTGCATTGACTCCGAAGATTAAAATGACCCTTGCCAGAGGAGGTGAGCGTCATGAAAGGTGCTCTCAAAGTTTTTCTACTCCGCCGTTGTCTATGAATGCTGTCACTTTACTTCTTGAAGCGATATTTCTGAAGGCAAAATCATTGGAGGCTCGTGGGAGGTTTAAAGGAGATTATAAGCAAGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008104 GO:0008150 GO:0033036 GO:0034613 GO:0051179 GO:0051641 GO:0070727 GO:0072657 GO:0072659 GO:1990778
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

179

Amino Acids

19.55

Weight (kDa)

9.47

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AccII CGCG 1 cut(s) 172
AciI CCGC 1 cut(s) 428
AclWI GGATC 1 cut(s) 153
AcuI CTGAAG 2 cut(s) 86, 497
AfaI GTAC 1 cut(s) 63
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 253, 464
AluBI AGCT 3 cut(s) 176, 221, 314
AluI AGCT 3 cut(s) 176, 221, 314
Alw21I GWGCWC 1 cut(s) 410
AlwI GGATC 1 cut(s) 153
Aor51HI AGCGCT 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 2 cut(s) 71, 111
AspLEI GCGC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 401
AsuII TTCGAA 1 cut(s) 47
BaeI ACNNNNGTAYC 2 cut(s) 53, 86
BarI GAAGNNNNNNTAC 4 cut(s) 28, 60, 303, 335
BauI CACGAG 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 301
BceAI ACGGC 2 cut(s) 114, 415
BcnI CCSGG 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 30
BseRI GAGGAG 3 cut(s) 22, 25, 399
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 30
BsmI GAATGC 1 cut(s) 448
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 1 cut(s) 145
Bsp68I TCGCGA 1 cut(s) 172
BspACI CCGC 1 cut(s) 428
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 145
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 174, 205
BstFNI CGCG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 174, 205
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 274
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 323, 398
CviJI RGCY 5 cut(s) 176, 185, 221, 314, 497
CviKI_1 RGCY 5 cut(s) 176, 185, 221, 314, 497
CviQI GTAC 1 cut(s) 62
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 86, 497
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 326, 401
FaiI YATR 8 cut(s) 150, 212, 258, 308, 324, 399, 440, 522
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FatI CATG 2 cut(s) 322, 397
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
GlaI GCGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 275
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 274
Hin1II CATG 2 cut(s) 326, 401
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 4 cut(s) 128, 161, 224, 355
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 3 cut(s) 297, 360, 477
Hpy188III TCNNGA 5 cut(s) 81, 119, 171, 398, 461
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 51, 472
HpyCH4V TGCA 2 cut(s) 137, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 326, 401
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 37, 66, 132, 162, 189, 394
Lsp1109I GCAGC 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 7 cut(s) 16, 36, 40, 156, 227, 294, 373
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 34
MroXI GAANNNNTTC 2 cut(s) 71, 111
MseI TTAA 3 cut(s) 92, 366, 510
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 448
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 25
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 326, 401
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 448
NruI TCGCGA 1 cut(s) 172
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 47
PagI TCATGA 1 cut(s) 397
PciI ACATGT 1 cut(s) 322
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 2 cut(s) 71, 111
PfeI GAWTC 3 cut(s) 128, 161, 224
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PscI ACATGT 1 cut(s) 322
PsiI TTATAA 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 114
RruI TCGCGA 1 cut(s) 172
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 3 cut(s) 92, 366, 510
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 410
SetI ASST 8 cut(s) 43, 63, 178, 223, 316, 391, 407, 509
SfuI TTCGAA 1 cut(s) 47
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 89
TfiI GAWTC 3 cut(s) 128, 161, 224
Tru1I TTAA 3 cut(s) 92, 366, 510
Tru9I TTAA 3 cut(s) 92, 366, 510
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 6 cut(s) 17, 120, 141, 156, 414, 455
TspGWI ACGGA 1 cut(s) 65
XceI RCATGY 1 cut(s) 326
XmnI GAANNNNTTC 2 cut(s) 71, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.