Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21061007 .. 21062195

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTATGATAAAATGTCATTTCGATTTAACACATCGTTTTTTAATTTCTATACGGCACAAATTGATGAATTTGGTAGATTTGATGGAAGGGATCCAGAAATAATCGCTTTCTGTTTTGTGAGTGTTCCGTCGAAGACACGTGGTCCGCCCTCCCTAGTCAAAATTTTCTCTCTGCATAGGGGCGGAGCAACCCAAGGATCAACACGGTCCCGGTCAGCTTCTCCTCTTCCAAATTCCTTGCCCCTCTTTCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.56

Weight (kDa)

9.85

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 183
AclWI	GGATC	3 cut(s)	86, 99, 205
AcsI	RAATTY	3 cut(s)	68, 162, 232
AcvI	CACGTG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	137
AhdI	GACNNNNNGTC	1 cut(s)	141
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AlwI	GGATC	3 cut(s)	86, 99, 205
ApoI	RAATTY	3 cut(s)	68, 162, 232
AspS9I	GGNCC	2 cut(s)	143, 207
AsuC2I	CCSGG	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	143, 207
BamHI	GGATCC	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	140
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	2 cut(s)	155, 251
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	143, 207
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	143, 207
BmiI	GGNNCC	2 cut(s)	93, 209
BmrFI	CCNGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	91, 197
BspACI	CCGC	2 cut(s)	146, 183
BspLI	GGNNCC	2 cut(s)	93, 209
BspPI	GGATC	3 cut(s)	86, 99, 205
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	91, 197
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	140
BstKTI	GATC	2 cut(s)	94, 200
BstMBI	GATC	2 cut(s)	91, 197
BstSCI	CCNGG	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	143, 207
CviJI	RGCY	1 cut(s)	218
CviKI_1	RGCY	1 cut(s)	218
DpnI	GATC	2 cut(s)	93, 199
DpnII	GATC	2 cut(s)	91, 197
DriI	GACNNNNNGTC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	231
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	2 cut(s)	135, 198
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	143, 207
Eco72I	CACGTG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaiI	YATR	3 cut(s)	6, 51, 177
FaqI	GGGAC	1 cut(s)	193
FspBI	CTAG	2 cut(s)	155, 251
HapII	CCGG	1 cut(s)	211
HpaII	CCGG	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	91, 197
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	2 cut(s)	108, 224
MaeI	CTAG	2 cut(s)	155, 251
MaeII	ACGT	1 cut(s)	139
MalI	GATC	2 cut(s)	93, 199
MboI	GATC	2 cut(s)	91, 197
MboII	GAAGA	2 cut(s)	145, 218
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	5 cut(s)	43, 60, 68, 162, 232
MnlI	CCTC	3 cut(s)	160, 234, 254
MseI	TTAA	2 cut(s)	27, 42
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	211
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	2 cut(s)	91, 197
NlaIV	GGNNCC	2 cut(s)	93, 209
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	93, 209
PspPI	GGNCC	2 cut(s)	143, 207
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	27, 42
Sau3AI	GATC	2 cut(s)	91, 197
Sau96I	GGNCC	2 cut(s)	143, 207
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	2 cut(s)	142, 220
SgeI	CNNG	9 cut(s)	107, 150, 152, 167, 206, 216, 222, 223, 250
SinI	GGWCC	2 cut(s)	143, 207
Sse9I	AATT	5 cut(s)	43, 60, 68, 162, 232
SsiI	CCGC	2 cut(s)	146, 183
SspMI	CTAG	2 cut(s)	155, 251
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	22, 131
TasI	AATT	5 cut(s)	43, 60, 68, 162, 232
Tru1I	TTAA	2 cut(s)	27, 42
Tru9I	TTAA	2 cut(s)	27, 42
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	143, 207
XapI	RAATTY	3 cut(s)	68, 162, 232
XspI	CTAG	2 cut(s)	155, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.