pycom05g18470

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
21389287 .. 21389821
535 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGGAGATCAGACTTTGGTCCAGGTCGGTCCAAAGGCGGCATATATGGGAATGGGCAAGGAAAGCCAAAGAAGGGAAGACCTGCACCAAGGGACGCGAAAAGAATCAGACCTTCAAGCGAACAAGATTACGACTATGAAGATGATGCTGAGATGTCATAGTGAATGGGGAACTTATGGTTTACCTTTCCATATGAGCTCTACGCGAGCAAGAACTGGGACCGAGCGCTTTCATTTGAGAAATCTTTTGATTGTCGAAAGCCATGCCTCTCAGGCAAGCAAAACCCCCTTTTTCACTTGTGTAATTAATCTTATCTCAGGCTGTAAGTATTACACCCGAGTCCTGATAGTATTTAAGATTTTGGTTATTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

9.76

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AccII CGCG 2 cut(s) 97, 205
AciI CCGC 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 336
Aor51HI AGCGCT 1 cut(s) 227
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 3 cut(s) 19, 29, 219
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 3 cut(s) 19, 29, 219
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 3 cut(s) 19, 29, 219
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 3 cut(s) 19, 29, 219
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 140, 284, 330
BseNI ACTGG 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 97, 205
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 106, 232
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 106, 232
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 141, 283, 329
BspFNI CGCG 2 cut(s) 97, 205
BspLI GGNNCC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 207, 277
BstDEI CTNAG 3 cut(s) 149, 270, 316
BstFNI CGCG 2 cut(s) 97, 205
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 63, 272
BstNI CCWGG 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 21
BstUI CGCG 2 cut(s) 97, 205
BstV2I GAAGAC 1 cut(s) 84
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 207, 277
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 19, 29, 219
CseI GACGC 1 cut(s) 103
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 66, 198, 261, 321
CviKI_1 RGCY 4 cut(s) 66, 198, 261, 321
DdeI CTNAG 3 cut(s) 149, 270, 316
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 19, 29, 219
Eco47III AGCGCT 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 266
FaqI GGGAC 2 cut(s) 106, 232
FatI CATG 1 cut(s) 262
FauNDI CATATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 39
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 229
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 2 cut(s) 104, 339
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 12, 109
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 66, 122
HpyCH4V TGCA 2 cut(s) 85, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 272
HpyF3I CTNAG 3 cut(s) 149, 270, 316
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 7 cut(s) 8, 35, 95, 201, 257, 303, 356
LweI GCATC 1 cut(s) 135
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 89, 151
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 303
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 1 cut(s) 277
MseI TTAA 2 cut(s) 306, 354
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 2 cut(s) 97, 205
MwoI GCNNNNNNNGC 2 cut(s) 63, 272
NdeI CATATG 1 cut(s) 192
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PshAI GACNNNNGTC 1 cut(s) 17
PshBI ATTAAT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 3 cut(s) 19, 29, 219
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 306, 354
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 3 cut(s) 19, 29, 219
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 200
SetI ASST 5 cut(s) 27, 84, 114, 187, 200
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 3 cut(s) 19, 29, 219
Sse9I AATT 1 cut(s) 303
SsiI CCGC 1 cut(s) 38
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 255
TaqII GACCGA 2 cut(s) 17, 236
TasI AATT 1 cut(s) 303
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 306, 354
Tru9I TTAA 2 cut(s) 306, 354
TspDTI ATGAA 2 cut(s) 152, 221
VpaK11BI GGWCC 3 cut(s) 19, 29, 219
VspI ATTAAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.