pycom05g18540

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
21469839 .. 21470245
407 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGGTCGGAAGATTCATCTTCTACTGCTTGCATGCCATGGAATGTGTAATAACTTCTTTCATGGCTTTAATCGTCTTGGACTCTTGGCCTTTAAAGTTCTTGTCTTGGTTGCAAAAGAAAATCAGAACTGCAACTCTTGATAAATATATATATTATTTTTTTTCCAAAGACAAGTTCGCAGATTTAGGTGCAATGGGGAAAGCTGCAATATCTCTTTCAAAGCTGGCGGATACAGCTTGTGAAGAGCTCCCTAGTACTATGGCTGCCGTTAGGCTTTCAGGCATGGAAATAAGTGATCTTACGCTAGAACTGAATGATCTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.24

Weight (kDa)

6.55

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 4 cut(s) 203, 223, 236, 247
AluI AGCT 4 cut(s) 203, 223, 236, 247
Alw21I GWGCWC 1 cut(s) 249
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 203, 263
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 190, 250
BceAI ACGGC 1 cut(s) 251
BciVI GTATCC 1 cut(s) 223
BfaI CTAG 2 cut(s) 252, 305
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 2 cut(s) 204, 264
BlsI GCNGC 2 cut(s) 205, 265
BmcAI AGTACT 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 36
BseMI GCAATG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 190, 250
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 249
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 295, 316
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 295, 316
BssT1I CCWWGG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 29, 33, 225
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 1 cut(s) 36
BstKTI GATC 2 cut(s) 298, 319
BstMBI GATC 2 cut(s) 295, 316
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 190, 250
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 29, 33, 225
Csp6I GTAC 1 cut(s) 255
CviAII CATG 4 cut(s) 32, 37, 61, 283
CviJI RGCY 8 cut(s) 65, 88, 203, 223, 236, 247, 263, 274
CviKI_1 RGCY 8 cut(s) 65, 88, 203, 223, 236, 247, 263, 274
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 320
DpnI GATC 2 cut(s) 297, 318
DpnII GATC 2 cut(s) 295, 316
DraI TTTAAA 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 4 cut(s) 35, 40, 64, 286
FaiI YATR 8 cut(s) 33, 38, 62, 147, 149, 151, 260, 284
FatI CATG 4 cut(s) 31, 36, 60, 282
Fnu4HI GCNGC 2 cut(s) 204, 264
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 204, 264
FspBI CTAG 2 cut(s) 252, 305
GluI GCNGC 2 cut(s) 204, 264
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 4 cut(s) 35, 40, 64, 286
HinfI GANTC 2 cut(s) 12, 80
Hpy188I TCNGA 2 cut(s) 8, 125
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4V TGCA 5 cut(s) 31, 112, 131, 191, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 4 cut(s) 35, 40, 64, 286
Kzo9I GATC 2 cut(s) 295, 316
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 2 cut(s) 209, 264
Lsp1109I GCAGC 2 cut(s) 190, 250
MaeI CTAG 2 cut(s) 252, 305
MalI GATC 2 cut(s) 297, 318
MboI GATC 2 cut(s) 295, 316
MboII GAAGA 3 cut(s) 10, 21, 254
MhlI GDGCHC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 74
MseI TTAA 2 cut(s) 68, 92
MwoI GCNNNNNNNGC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 36
NdeII GATC 2 cut(s) 295, 316
NlaIII CATG 4 cut(s) 35, 40, 64, 286
NspI RCATGY 1 cut(s) 35
PaeI GCATGC 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 205, 265
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 68, 92
SatI GCNGC 2 cut(s) 204, 264
Sau3AI GATC 2 cut(s) 295, 316
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 249
SetI ASST 6 cut(s) 190, 205, 225, 238, 249, 326
SphI GCATGC 1 cut(s) 35
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 252, 305
SstI GAGCTC 1 cut(s) 249
StyI CCWWGG 1 cut(s) 36
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 68, 92
Tru9I TTAA 2 cut(s) 68, 92
TseI GCWGC 2 cut(s) 203, 263
TspDTI ATGAA 2 cut(s) 4, 49
XceI RCATGY 1 cut(s) 35
XspI CTAG 2 cut(s) 252, 305
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.