pycom05g18560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
21471881 .. 21472258
378 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGGCGTCAGCAAATCCACTCAAGCCGTTCAAGCAGCAGAAGCTGGGATTCTGCAGATTGGTACAATTGCACGGCAGCAGACTATGTCTACGTTTTAAGCTCCATCTCTGTGGCTTCTGCAATGATACAGGAGAGGGCAAGCCTTCCCATCATCTCTTTGCAACCCGCTGTTGTCGGAGCAGCAAAGACGACCTTGTTGTCGGCCAAGCCACTAGGAACTTGATCAATATAATTTCTAGAAGGGACGACTCAGAGAATGAGGACGACACTGGAATTGATAGGTCGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

8.63

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 88
AciI CCGC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 2 cut(s) 43, 100
AluI AGCT 2 cut(s) 43, 100
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 34, 75, 180
ApoI RAATTY 1 cut(s) 288
BbvI GCAGC 3 cut(s) 46, 87, 192
BccI CCATC 2 cut(s) 111, 156
BceAI ACGGC 2 cut(s) 10, 88
BclI TGATCA 1 cut(s) 222
BfaI CTAG 2 cut(s) 213, 237
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 3 cut(s) 35, 76, 181
BlsI GCNGC 3 cut(s) 36, 77, 182
BpuEI CTTGAG 1 cut(s) 5
BsaHI GRCGYC 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 274
BseXI GCAGC 3 cut(s) 46, 87, 192
BseYI CCCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 274
BssMI GATC 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 250
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 31, 40
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 46, 87, 192
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 43
Csp6I GTAC 1 cut(s) 62
CviJI RGCY 7 cut(s) 25, 43, 100, 114, 142, 204, 209
CviKI_1 RGCY 7 cut(s) 25, 43, 100, 114, 142, 204, 209
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 202
FaiI YATR 2 cut(s) 85, 230
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 257
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 35, 76, 181
Fsp4HI GCNGC 3 cut(s) 35, 76, 181
FspBI CTAG 2 cut(s) 213, 237
GluI GCNGC 3 cut(s) 35, 76, 181
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 2 cut(s) 48, 248
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 177, 253, 286
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 153, 234
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 54, 70, 120, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 40
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 1 cut(s) 91
Hsp92I GRCGYC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 105, 177
LpnPI CCDG 3 cut(s) 29, 114, 255
Lsp1109I GCAGC 3 cut(s) 46, 87, 192
MaeI CTAG 2 cut(s) 213, 237
MaeII ACGT 1 cut(s) 91
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MfeI CAATTG 1 cut(s) 65
MluCI AATT 4 cut(s) 65, 231, 273, 288
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 155, 264
MnlI CCTC 2 cut(s) 127, 253
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 168
MunI CAATTG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 31, 40
NdeII GATC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 48
PflFI GACNNNGTC 1 cut(s) 84
PkrI GCNGC 3 cut(s) 36, 77, 182
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 84
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 35, 76, 181
Sau3AI GATC 1 cut(s) 222
SchI GAGTC 1 cut(s) 242
SetI ASST 5 cut(s) 45, 94, 102, 195, 284
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 4 cut(s) 65, 231, 273, 288
SsiI CCGC 1 cut(s) 166
SspMI CTAG 2 cut(s) 213, 237
TaiI ACGT 1 cut(s) 94
TasI AATT 4 cut(s) 65, 231, 273, 288
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 274
TseI GCWGC 3 cut(s) 34, 75, 180
TspRI CASTG 1 cut(s) 274
Tth111I GACNNNGTC 1 cut(s) 84
XapI RAATTY 1 cut(s) 288
XbaI TCTAGA 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 2 cut(s) 213, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.