Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21668880 .. 21672736

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGATTGTCCTGAAAATGAAGCCTGCGAAAAGATTTTGGTGAAGATGGGGCTTAGAGGTTATCAGATAGGGAAAACAAAGGTTTTCCTAAGAGCTGGTCAGATGGCTGAGCTAGATGCAAAGAGAATACTCTTACTTGGCAACTCATCTAAGGTGATTCAAACACGAGGCAGGACTCGTATAACTCGTAAAAAGTATGTTTCTACACGGGAGGCTTCTATTTGTGTACAATCATTTTGTAAAGGAGAACTGGCTCGCAAGTTATTCAAGCGCAAGAAGAGGGAGATTTCTGCAGTTAAAATTCAGAAGACTGCCCGTAAACGCCTGGCAAGAAAAGACTATCTCAGAATCAAGTTCGCTTCGACTATCTTGCAGGCAGGTGTACGGGCAATGGCTGCCCGTGATGAATTTAGATATAGGGTTAATGCGGCAATTATTATTCAGACAGGTTTAAAGGCAATGGCTGCTCGTGATGATTTTAGATGTAGAATTAATGCGGCAGTTATTATTCAGACAGGTTTACGGGCAATGGCTGCTCGTGATGTTTTTAGATGTAGAATTAATGCGGCAGTTATTATTCAGACAGGTTTACGGGCAATGGCTGATCGTGATGGTTTTAGATGTAGAGCCCAATCTAAGCCTAAAGTTATTGTTCAGACTGATTTGGAGACAAAAATAGCAGAAACACCGAAGTTGGAGTCCTCCATGCAAGCTAATACTGACTCGGAAAAAGAAAAGGTTGAAGAGGCAACAAATGCAGAGTCCTCCCTGCTTACTAATGTAAGCAGAGGGTTTGAAATAGATGCGTTGTCTAAAAGTCAGGTTGCACAGGTAGAAATTGAAGATGCATGCTGTATAACCAAAGATCTTTCAAGTCCTGATCAAAACGCTGAAAGAGTTAAAATTCTTACTGCAGAAGTTGAAAGTCTGAAGGTCATGTTGCAAGCTGAAAAACAAAGAGCCAATGAGTGTGAAAGGAGATACGTAGAAGCTCGGGTATCAAGTGAGGAAGGACGTAGAAAGTTAGAGGAAACTGAAAGGATAGTTCTTCAACTTCAGGAATCTTTGAACAGGATGATATATTGCATGTCAAACCAAGTTTCCGAGCTGAAAACAATATTATCTACAGCATCCAAGTCAAGTTCAACAACTTCAGGACCTTTTGTTAGACACGAAGGGTTTGATAGCATTTCCAGTAACTCTGATTATTCATCCACGGACTCAGATTTCACTTTTCCAGCTCCAGCTACAAGTTCAGCAAACTTTTCTTCTACTGGCCCCAGTTCTATCCAGCTTATAGTTCAGGACGTTTCAGGCGGAGAAGTTTCAGGATCTGAAAATGAGAAGGAGGGGGCTTTTGATGACTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0008150 GO:0009987 GO:0015629 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030029 GO:0030048 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ Myosin_N Myosin_head

Protein Analysis

458

Amino Acids

50.88

Weight (kDa)

9.29

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AciI	CCGC	4 cut(s)	428, 497, 566, 1317
AclWI	GGATC	1 cut(s)	1339
AcsI	RAATTY	3 cut(s)	300, 407, 903
AcuI	CTGAAG	3 cut(s)	950, 1040, 1137
AfaI	GTAC	2 cut(s)	228, 384
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	9 cut(s)	95, 112, 713, 947, 992, 1108, 1241, 1247, 1294
AluI	AGCT	9 cut(s)	95, 112, 713, 947, 992, 1108, 1241, 1247, 1294
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	1 cut(s)	1339
AlwNI	CAGNNNCTG	1 cut(s)	1334
Ama87I	CYCGRG	1 cut(s)	993
AoxI	GGCC	1 cut(s)	1276
ApeKI	GCWGC	3 cut(s)	395, 464, 533
ApoI	RAATTY	3 cut(s)	300, 407, 903
ArsI	GACNNNNNNTTYG	4 cut(s)	683, 715, 746, 778
AseI	ATTAAT	2 cut(s)	492, 561
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	1157, 1277
AsuHPI	GGTGA	2 cut(s)	52, 166
AvaI	CYCGRG	1 cut(s)	993
AvaII	GGWCC	1 cut(s)	1157
BanII	GRGCYC	1 cut(s)	631
BauI	CACGAG	3 cut(s)	165, 468, 537
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	382, 451, 520
BccI	CCATC	3 cut(s)	40, 97, 605
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	3 cut(s)	291, 912, 1125
BfuAI	ACCTGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	865
BisI	GCNGC	6 cut(s)	396, 429, 465, 498, 534, 567
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	6 cut(s)	397, 430, 466, 499, 535, 568
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	1157
BmeT110I	CYCGRG	1 cut(s)	993
BmgT120I	GGNCC	2 cut(s)	1157, 1277
BmiI	GGNNCC	1 cut(s)	1279
BmrFI	CCNGG	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	1275
BmsI	GCATC	4 cut(s)	106, 793, 835, 1139
BmuI	ACTGGG	1 cut(s)	1275
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	1227
Bpu1102I	GCTNAGC	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	985
BsaJI	CCNNGG	1 cut(s)	1215
Bse1I	ACTGG	4 cut(s)	255, 1194, 1279, 1281
Bse3DI	GCAATG	4 cut(s)	396, 465, 534, 603
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	1215
BseGI	GGATG	3 cut(s)	1080, 1130, 1211
BseMI	GCAATG	4 cut(s)	396, 465, 534, 603
BseMII	CTCAG	3 cut(s)	99, 358, 1236
BseNI	ACTGG	4 cut(s)	255, 1194, 1279, 1281
BseXI	GCAGC	3 cut(s)	382, 451, 520
BshFI	GGCC	1 cut(s)	1278
BsiHKCI	CYCGRG	1 cut(s)	993
BsmAI	GTCTC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	1278
BsoBI	CYCGRG	1 cut(s)	993
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	4 cut(s)	604, 865, 880, 1331
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	428, 497, 566, 1317
BspANI	GGCC	1 cut(s)	1278
BspCNI	CTCAG	3 cut(s)	100, 357, 1235
BspLI	GGNNCC	1 cut(s)	1279
BspMAI	CTGCAG	2 cut(s)	295, 916
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	1339
BsrDI	GCAATG	4 cut(s)	396, 465, 534, 603
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	4 cut(s)	255, 1194, 1279, 1281
BssECI	CCNNGG	1 cut(s)	1215
BssMI	GATC	4 cut(s)	604, 865, 880, 1331
BssSI	CACGAG	3 cut(s)	165, 468, 537
Bst2BI	CACGAG	3 cut(s)	165, 468, 537
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	272, 738
BstAPI	GCANNNNNTGC	4 cut(s)	395, 464, 533, 755
BstAUI	TGTACA	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	985
BstC8I	GCNNGC	6 cut(s)	25, 256, 375, 711, 850, 945
BstDEI	CTNAG	7 cut(s)	53, 89, 108, 150, 344, 636, 1222
BstDSI	CCRYGG	1 cut(s)	1215
BstF5I	GGATG	3 cut(s)	1080, 1130, 1211
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	4 cut(s)	607, 868, 883, 1334
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	4 cut(s)	604, 865, 880, 1331
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 464, 533, 755
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	852, 1090
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	3 cut(s)	291, 912, 1125
BstSNI	TACGTA	1 cut(s)	985
BstV1I	GCAGC	3 cut(s)	382, 451, 520
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	865, 1331
BstYI	RGATCY	2 cut(s)	865, 1331
BsuRI	GGCC	1 cut(s)	1278
BtgI	CCRYGG	1 cut(s)	1215
BtsCI	GGATG	3 cut(s)	1080, 1130, 1211
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	6 cut(s)	25, 256, 375, 711, 850, 945
CaiI	CAGNNNCTG	1 cut(s)	1334
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	1157, 1277
Csp6I	GTAC	2 cut(s)	227, 383
CviAII	CATG	4 cut(s)	706, 849, 937, 1087
CviQI	GTAC	2 cut(s)	227, 383
DdeI	CTNAG	7 cut(s)	53, 89, 108, 150, 344, 636, 1222
DpnI	GATC	4 cut(s)	606, 867, 882, 1333
DpnII	GATC	4 cut(s)	604, 865, 880, 1331
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	272, 738
EarI	CTCTTC	2 cut(s)	272, 738
EciI	GGCGGA	1 cut(s)	1332
Eco105I	TACGTA	1 cut(s)	985
Eco24I	GRGCYC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1157
Eco57I	CTGAAG	3 cut(s)	950, 1040, 1137
Eco88I	CYCGRG	1 cut(s)	993
EcoO109I	RGGNCCY	1 cut(s)	1157
EcoRII	CCWGG	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	631
FaeI	CATG	4 cut(s)	709, 852, 940, 1090
FatI	CATG	4 cut(s)	705, 848, 936, 1086
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	6 cut(s)	396, 429, 465, 498, 534, 567
FokI	GGATG	3 cut(s)	1087, 1117, 1198
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	6 cut(s)	396, 429, 465, 498, 534, 567
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	6 cut(s)	396, 429, 465, 498, 534, 567
GsuI	CTGGAG	1 cut(s)	1227
HaeIII	GGCC	1 cut(s)	1278
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	709, 852, 940, 1090
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	8 cut(s)	157, 175, 348, 698, 722, 761, 1061, 1220
HphI	GGTGA	2 cut(s)	52, 166
Hpy166II	GTNNAC	5 cut(s)	227, 320, 383, 521, 590
Hpy188III	TCNNGA	9 cut(s)	11, 470, 539, 608, 878, 1058, 1155, 1304, 1329
Hpy8I	GTNNAC	5 cut(s)	227, 320, 383, 521, 590
HpyAV	CCTTC	4 cut(s)	925, 1004, 1169, 1339
HpyCH4IV	ACGT	3 cut(s)	984, 1015, 1308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 464, 533, 755
HpyF3I	CTNAG	7 cut(s)	53, 89, 108, 150, 344, 636, 1222
HpySE526I	ACGT	3 cut(s)	984, 1015, 1308
Hsp92II	CATG	4 cut(s)	709, 852, 940, 1090
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	604, 865, 880, 1331
LmnI	GCTCC	1 cut(s)	1246
Lsp1109I	GCAGC	3 cut(s)	382, 451, 520
LweI	GCATC	4 cut(s)	106, 793, 835, 1139
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	3 cut(s)	984, 1015, 1308
MaeIII	GTNAC	1 cut(s)	1196
MalI	GATC	4 cut(s)	606, 867, 882, 1333
MboI	GATC	4 cut(s)	604, 865, 880, 1331
MboII	GAAGA	8 cut(s)	55, 289, 319, 755, 854, 1040, 1260, 1360
MflI	RGATCY	2 cut(s)	865, 1331
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	7 cut(s)	300, 407, 432, 489, 558, 837, 903
MlyI	GAGTC	5 cut(s)	169, 707, 716, 770, 1214
MmeI	TCCRAC	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	850
MseI	TTAA	6 cut(s)	297, 423, 452, 492, 561, 900
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	395, 464, 533, 755
NdeII	GATC	4 cut(s)	604, 865, 880, 1331
NlaIII	CATG	4 cut(s)	709, 852, 940, 1090
NlaIV	GGNNCC	1 cut(s)	1279
NsiI	ATGCAT	1 cut(s)	850
NspI	RCATGY	2 cut(s)	852, 1090
PaeI	GCATGC	1 cut(s)	852
PaqCI	CACCTGC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	157, 348, 1061
PkrI	GCNGC	6 cut(s)	397, 430, 466, 499, 535, 568
PleI	GAGTC	5 cut(s)	169, 706, 716, 769, 1214
PpsI	GAGTC	5 cut(s)	169, 706, 716, 769, 1214
Ppu21I	YACGTR	1 cut(s)	985
PpuMI	RGGWCCY	1 cut(s)	1157
PshBI	ATTAAT	2 cut(s)	492, 561
Psp5II	RGGWCCY	1 cut(s)	1157
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	1279
PspPI	GGNCC	2 cut(s)	1157, 1277
PspPPI	RGGWCCY	1 cut(s)	1157
PstI	CTGCAG	2 cut(s)	295, 916
PstNI	CAGNNNCTG	1 cut(s)	1334
PsuI	RGATCY	2 cut(s)	865, 1331
RsaI	GTAC	2 cut(s)	228, 384
RsaNI	GTAC	2 cut(s)	227, 383
SaqAI	TTAA	6 cut(s)	297, 423, 452, 492, 561, 900
SatI	GCNGC	6 cut(s)	396, 429, 465, 498, 534, 567
Sau3AI	GATC	4 cut(s)	604, 865, 880, 1331
Sau96I	GGNCC	2 cut(s)	1157, 1277
SchI	GAGTC	5 cut(s)	169, 707, 716, 770, 1214
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	4 cut(s)	106, 793, 835, 1139
SfcI	CTRYAG	3 cut(s)	291, 912, 1125
SinI	GGWCC	1 cut(s)	1157
SnaBI	TACGTA	1 cut(s)	985
SphI	GCATGC	1 cut(s)	852
Sse9I	AATT	7 cut(s)	300, 407, 432, 489, 558, 837, 903
SsiI	CCGC	4 cut(s)	428, 497, 566, 1317
SspI	AATATT	1 cut(s)	1119
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	324
TaiI	ACGT	3 cut(s)	987, 1018, 1311
TaqI	TCGA	1 cut(s)	362
TasI	AATT	7 cut(s)	300, 407, 432, 489, 558, 837, 903
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	3 cut(s)	431, 500, 569
TfiI	GAWTC	3 cut(s)	157, 348, 1061
Tru1I	TTAA	6 cut(s)	297, 423, 452, 492, 561, 900
Tru9I	TTAA	6 cut(s)	297, 423, 452, 492, 561, 900
TseI	GCWGC	3 cut(s)	395, 464, 533
TspDTI	ATGAA	3 cut(s)	33, 420, 1200
TspGWI	ACGGA	1 cut(s)	1232
VpaK11BI	GGWCC	1 cut(s)	1157
VspI	ATTAAT	2 cut(s)	492, 561
XapI	RAATTY	3 cut(s)	300, 407, 903
XceI	RCATGY	2 cut(s)	852, 1090
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.