pycom05g18940

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
21885910 .. 21886157
248 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGCTACCATTGGAGGGCGAGCAAGTGCAATCGCCACCCTTGCCTTTTCTCCACAGAGAGCTCTTGACGCCGCCGTCGCAGCAAGGTCTTAATGGGACGGCCTCGACTAAGCGCTATCACGCCTTCACCGCTAACACCGACGGTTCATCGTCCCGGAATCTAAATAACTTCAATGGCGGGGCTTCTTCGACGTGGGGCTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.33

Weight (kDa)

8.38

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AciI CCGC 3 cut(s) 71, 129, 177
AcyI GRCGYC 1 cut(s) 68
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 192
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 63
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 118
BanII GRGCYC 2 cut(s) 63, 200
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 91
BceAI ACGGC 2 cut(s) 58, 114
BcnI CCSGG 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 2 cut(s) 71, 80
BlsI GCNGC 2 cut(s) 72, 81
Bme1390I CCNGG 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 109, 136
BslI CCNNNNNNNGG 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 109, 136
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 63, 200
BspACI CCGC 3 cut(s) 71, 129, 177
BspANI GGCC 1 cut(s) 101
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstMWI GCNNNNNNNGC 5 cut(s) 40, 67, 76, 79, 128
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 101
BtrI CACGTC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 20
CfoI GCGC 1 cut(s) 114
CseI GACGC 1 cut(s) 76
CviJI RGCY 4 cut(s) 61, 101, 182, 198
CviKI_1 RGCY 4 cut(s) 61, 101, 182, 198
DdeI CTNAG 1 cut(s) 108
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 63, 200
Eco47III AGCGCT 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoT38I GRGCYC 2 cut(s) 63, 200
FaqI GGGAC 2 cut(s) 109, 136
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 2 cut(s) 71, 80
FriOI GRGCYC 2 cut(s) 63, 200
Fsp4HI GCNGC 2 cut(s) 71, 80
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 71, 80
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 64, 201
Hpy99I CGWCG 3 cut(s) 79, 143, 193
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 67, 76, 79, 128
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 68
HspAI GCGC 1 cut(s) 112
LpnPI CCDG 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 191
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 63, 200
MnlI CCTC 2 cut(s) 7, 112
MseI TTAA 1 cut(s) 90
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 5 cut(s) 40, 67, 76, 79, 128
NciI CCSGG 1 cut(s) 154
PfeI GAWTC 1 cut(s) 157
PfoI TCCNGGA 1 cut(s) 152
PkrI GCNGC 2 cut(s) 72, 81
Psp124BI GAGCTC 1 cut(s) 63
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 71, 80
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 2 cut(s) 63, 200
SetI ASST 3 cut(s) 63, 88, 194
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SsiI CCGC 3 cut(s) 71, 129, 177
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 104, 188
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.