Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22444797 .. 22447109

Gene Structure 2313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCAGCAGTGGCAGACATTTACGCGTGGCCTGCCCAACATACTTAGACCCTTCGTGCTTTTGATCAAGGCAGTGACTCAGTCTTTAATGCTTCTTTGGTTTCTTTGCGTTAAGATACCTGCTCCCGATGTTTTTCTAGTTCAGAATCCACCCTCTGTTCCGACCTTAATGGCTGTAAAATGGGCAAGCTGGCTTAGGAAATCTGCCTTTATTGTTGACTGGCATAATTTTGGATATACTTTACTGGCATTGTCTCTTGGAAGAAGTAGTCGATTTGTGGCAATATACCGTTGGTTTGAGAGGTATTTCGGGAAGATGGCAGATGGTTCCCTATGTGTAACGAGGGCAATGCAACATGAATTGGCTCAAAATTGGGGAATTAAAGCCACAGTTTTATATGATCAGCCTCCTGAGTTTTTCCGACCTGCTTCACTTGAAGAAAAGCATAAGTTGTTCTGCAGATTAGATAAAAATCTAAGGCAGCCACTTGGTGTTCACGATTGCACTAGCACTGGATCAGGGGGAGTGAATACAGACATAAATGATACTCTGTTTACCACTCTGGTTGGTACTGACGTTACTTCGAAGCCACACAGGCCGGCACTCATAGTTAGCAGTACAAGCTGGACTCCTGACGAAGATTTTGAAATTCTCTTGGAAGCAGCTGTCATGTATGACAGGCGTGTTGCCGCTATTTTAAATGAAGAAGATTCTACTAAAGAAGAGGTTCTTTGGAAGGATATTCATGGTGGGAAGCAATACTTATACCCTAGGCTGTTGTTTGTCATTACTGGTAAAGGGCCTGAAAAGCAAAAATATGAAGAAAAAATTAGCAGATTACACCTCAAACGCGTGGCATTTCGAACTATGTGGTTGTCTGCTGAAGACTATCCATTGCTTCTTGGATCGAGCGGATCTTGGTGTATGCTTGCATACGTCCTCATCAGGGTTGGATCTTCCCATGAAGGTCGTGGACATGTTTGGCTGTGGGCTGCCAGTTTGTGCTGTTTCCTACTCATGCATCAAGGAACTAGTGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0048856 GO:0048868 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_trans_4_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

348

Amino Acids

39.58

Weight (kDa)

8.88

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_trans_4_4	PF13579	39 - 129	2.1e-08	Glycosyl transferase 4-like domain
Glyco_transf_4	PF13439	39 - 129	9e-06	Glycosyltransferase Family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	127, 433
AccBSI	CCGCTC	1 cut(s)	912
AccII	CGCG	2 cut(s)	25, 852
AciI	CCGC	2 cut(s)	690, 912
AclWI	GGATC	4 cut(s)	523, 913, 922, 961
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	903
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	571, 619
AfiI	CCNNNNNNNGG	1 cut(s)	946
AflIII	ACRYGT	3 cut(s)	23, 850, 976
AgsI	TTSAA	2 cut(s)	437, 647
AhlI	ACTAGT	1 cut(s)	1031
AluBI	AGCT	3 cut(s)	189, 624, 665
AluI	AGCT	3 cut(s)	189, 624, 665
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	4 cut(s)	523, 913, 922, 961
AoxI	GGCC	3 cut(s)	28, 596, 800
ApeKI	GCWGC	4 cut(s)	4, 481, 662, 992
ApoI	RAATTY	1 cut(s)	648
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
Asp700I	GAANNNNTTC	1 cut(s)	726
AspA2I	CCTAGG	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	800
AsuII	TTCGAA	2 cut(s)	584, 862
AvrII	CCTAGG	1 cut(s)	770
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BbsI	GAAGAC	1 cut(s)	891
BbvI	GCAGC	4 cut(s)	16, 493, 674, 979
BccI	CCATC	2 cut(s)	310, 317
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BclI	TGATCA	2 cut(s)	63, 400
BcoDI	GTCTC	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	1031
BfaI	CTAG	4 cut(s)	137, 507, 771, 1032
BfmI	CTRYAG	1 cut(s)	457
BfuAI	ACCTGC	2 cut(s)	127, 433
BglI	GCCNNNNNGGC	1 cut(s)	595
BisI	GCNGC	5 cut(s)	5, 482, 663, 690, 993
BlnI	CCTAGG	1 cut(s)	770
BlsI	GCNGC	5 cut(s)	6, 483, 664, 691, 994
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	1 cut(s)	1030
BpiI	GAAGAC	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	194
Bpu14I	TTCGAA	2 cut(s)	584, 862
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	1 cut(s)	946
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	5 cut(s)	224, 249, 517, 796, 996
Bse3DI	GCAATG	2 cut(s)	354, 893
Bse8I	GATNNNNATC	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	770
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	946
BseMI	GCAATG	2 cut(s)	354, 893
BseMII	CTCAG	2 cut(s)	92, 402
BseNI	ACTGG	5 cut(s)	224, 249, 517, 796, 996
BseXI	GCAGC	4 cut(s)	16, 493, 674, 979
Bsh1236I	CGCG	2 cut(s)	25, 852
BshFI	GGCC	3 cut(s)	30, 598, 802
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	946
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	3 cut(s)	30, 598, 802
Bsp119I	TTCGAA	2 cut(s)	584, 862
Bsp143I	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
BspACI	CCGC	2 cut(s)	690, 912
BspANI	GGCC	3 cut(s)	30, 598, 802
BspCNI	CTCAG	2 cut(s)	91, 403
BspFNI	CGCG	2 cut(s)	25, 852
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	461
BspMI	ACCTGC	2 cut(s)	127, 433
BspPI	GGATC	4 cut(s)	523, 913, 922, 961
BspT104I	TTCGAA	2 cut(s)	584, 862
BsrBI	CCGCTC	1 cut(s)	912
BsrDI	GCAATG	2 cut(s)	354, 893
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	5 cut(s)	224, 249, 517, 796, 996
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
BssT1I	CCWWGG	1 cut(s)	770
Bst4CI	ACNGT	2 cut(s)	290, 391
Bst6I	CTCTTC	1 cut(s)	717
BstBI	TTCGAA	2 cut(s)	584, 862
BstC8I	GCNNGC	5 cut(s)	32, 187, 191, 600, 930
BstDEI	CTNAG	5 cut(s)	44, 78, 194, 411, 476
BstFNI	CGCG	2 cut(s)	25, 852
BstKTI	GATC	6 cut(s)	66, 403, 518, 908, 917, 956
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 31, 595, 621, 808
BstNSI	RCATGY	1 cut(s)	980
BstSFI	CTRYAG	1 cut(s)	457
BstUI	CGCG	2 cut(s)	25, 852
BstV1I	GCAGC	4 cut(s)	16, 493, 674, 979
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	2 cut(s)	914, 953
BstYI	RGATCY	2 cut(s)	914, 953
BsuRI	GGCC	3 cut(s)	30, 598, 802
BtsI	GCAGTG	2 cut(s)	14, 78
BtsIMutI	CAGTG	3 cut(s)	14, 78, 510
BveI	ACCTGC	2 cut(s)	127, 433
Cac8I	GCNNGC	5 cut(s)	32, 187, 191, 600, 930
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	570, 618
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	6 cut(s)	356, 670, 746, 962, 977, 1018
CviQI	GTAC	2 cut(s)	570, 618
DdeI	CTNAG	5 cut(s)	44, 78, 194, 411, 476
DpnI	GATC	6 cut(s)	65, 402, 517, 907, 916, 955
DpnII	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
DraI	TTTAAA	1 cut(s)	699
DraIII	CACNNNGTG	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	903
EcoO109I	RGGNCCY	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	770
EcoT22I	ATGCAT	1 cut(s)	1023
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	6 cut(s)	359, 673, 749, 965, 980, 1021
FalI	AAGNNNNNCTT	4 cut(s)	714, 746, 746, 778
FatI	CATG	6 cut(s)	355, 669, 745, 961, 976, 1017
FbaI	TGATCA	2 cut(s)	63, 400
Fnu4HI	GCNGC	5 cut(s)	5, 482, 663, 690, 993
Fsp4HI	GCNGC	5 cut(s)	5, 482, 663, 690, 993
FspBI	CTAG	4 cut(s)	137, 507, 771, 1032
GluI	GCNGC	5 cut(s)	5, 482, 663, 690, 993
HaeIII	GGCC	3 cut(s)	30, 598, 802
HapII	CCGG	1 cut(s)	599
Hin1II	CATG	6 cut(s)	359, 673, 749, 965, 980, 1021
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	76, 145, 628, 710
HpaII	CCGG	1 cut(s)	599
Hpy166II	GTNNAC	4 cut(s)	217, 496, 555, 974
Hpy188I	TCNGA	3 cut(s)	144, 162, 422
Hpy188III	TCNNGA	5 cut(s)	125, 310, 410, 497, 632
Hpy8I	GTNNAC	4 cut(s)	217, 496, 555, 974
HpyAV	CCTTC	3 cut(s)	61, 730, 959
HpyCH4III	ACNGT	2 cut(s)	290, 391
HpyCH4IV	ACGT	2 cut(s)	576, 936
HpyCH4V	TGCA	7 cut(s)	4, 352, 459, 504, 932, 1021, 1037
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 31, 595, 621, 808
HpyF3I	CTNAG	5 cut(s)	44, 78, 194, 411, 476
HpySE526I	ACGT	2 cut(s)	576, 936
Hsp92II	CATG	6 cut(s)	359, 673, 749, 965, 980, 1021
KroI	GCCGGC	1 cut(s)	598
KroNI	GCCGGC	1 cut(s)	600
Ksp22I	TGATCA	2 cut(s)	63, 400
Kzo9I	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	4 cut(s)	16, 493, 674, 979
LweI	GCATC	1 cut(s)	1030
MaeI	CTAG	4 cut(s)	137, 507, 771, 1032
MaeII	ACGT	2 cut(s)	576, 936
MaeIII	GTNAC	3 cut(s)	73, 337, 577
MalI	GATC	6 cut(s)	65, 402, 517, 907, 916, 955
MbiI	CCGCTC	1 cut(s)	912
MboI	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
MflI	RGATCY	2 cut(s)	914, 953
MluCI	AATT	6 cut(s)	226, 359, 370, 378, 648, 828
MluI	ACGCGT	2 cut(s)	23, 850
MlyI	GAGTC	2 cut(s)	70, 622
MmeI	TCCRAC	3 cut(s)	185, 445, 931
MnlI	CCTC	7 cut(s)	163, 294, 336, 417, 718, 854, 950
Mph1103I	ATGCAT	1 cut(s)	1023
MroNI	GCCGGC	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	5 cut(s)	86, 111, 167, 381, 698
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	25, 852
MwoI	GCNNNNNNNGC	5 cut(s)	10, 31, 595, 621, 808
NaeI	GCCGGC	1 cut(s)	600
NdeII	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
NgoMIV	GCCGGC	1 cut(s)	598
NlaIII	CATG	6 cut(s)	359, 673, 749, 965, 980, 1021
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	1023
NspI	RCATGY	1 cut(s)	980
NspV	TTCGAA	2 cut(s)	584, 862
PciI	ACATGT	1 cut(s)	976
PdiI	GCCGGC	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	145, 710
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	6, 483, 664, 691, 994
PleI	GAGTC	2 cut(s)	70, 622
PpsI	GAGTC	2 cut(s)	70, 622
PscI	ACATGT	1 cut(s)	976
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	800
PstI	CTGCAG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	914, 953
PsyI	GACNNNGTC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	571, 619
RsaNI	GTAC	2 cut(s)	570, 618
SaqAI	TTAA	5 cut(s)	86, 111, 167, 381, 698
SatI	GCNGC	5 cut(s)	5, 482, 663, 690, 993
Sau3AI	GATC	6 cut(s)	63, 400, 515, 905, 914, 953
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	2 cut(s)	70, 622
SfaNI	GCATC	1 cut(s)	1030
SfcI	CTRYAG	1 cut(s)	457
SfuI	TTCGAA	2 cut(s)	584, 862
SpeI	ACTAGT	1 cut(s)	1031
Sse9I	AATT	6 cut(s)	226, 359, 370, 378, 648, 828
SsiI	CCGC	2 cut(s)	690, 912
SspMI	CTAG	4 cut(s)	137, 507, 771, 1032
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	2 cut(s)	290, 391
TaiI	ACGT	2 cut(s)	579, 939
TaqI	TCGA	4 cut(s)	271, 584, 862, 908
TasI	AATT	6 cut(s)	226, 359, 370, 378, 648, 828
TatI	WGTACW	1 cut(s)	617
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	2 cut(s)	145, 710
Tru1I	TTAA	5 cut(s)	86, 111, 167, 381, 698
Tru9I	TTAA	5 cut(s)	86, 111, 167, 381, 698
TscAI	CASTG	3 cut(s)	14, 78, 517
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	4 cut(s)	4, 481, 662, 992
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	372, 717, 734, 834, 978
TspRI	CASTG	3 cut(s)	14, 78, 517
Tth111I	GACNNNGTC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	968
XmaJI	CCTAGG	1 cut(s)	770
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	4 cut(s)	137, 507, 771, 1032
Zsp2I	ATGCAT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.