pycom05g20270

PDDEXK-like family of unknown function

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
23076527 .. 23078551
2025 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGAGAGCTCCGACGACGAGCTCGATATATTCGCTGGAGTTTTCGAGTCTGATTCCATGCGTGAGCGTCTCGGAGAGAAACCTCCTGGCCGATACGGCGAGGATCGTCGAAGCAAACAAGAATCTCAAACAAAAAGACGATTTGAGGAAGATGGTCACCGACGGACTGCAATCCCTCGGCTATGATTCCTTCACCTGCAAATTCAAGGTCTGGATTTACGTGTTGGTGATGTCATCCGTTTTGAAAAGAAGACAAAGGATAAAGCACAAAAGCAAACATCACAAAGTCACCTCCTCTGAAAAATATGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

9.91

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 14 - 69 1.6e-06 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 2 cut(s) 205, 244
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 2 cut(s) 8, 21
AluI AGCT 2 cut(s) 8, 21
Alw21I GWGCWC 2 cut(s) 10, 23
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AsuHPI GGTGA 4 cut(s) 148, 184, 238, 280
BanII GRGCYC 2 cut(s) 10, 23
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 10, 23
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 283
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 10, 23
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 10, 23
Bsp143I GATC 1 cut(s) 102
BspANI GGCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 220
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 86
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 233
BveI ACCTGC 1 cut(s) 203
CseI GACGC 1 cut(s) 55
CviAII CATG 1 cut(s) 57
CviJI RGCY 4 cut(s) 8, 21, 89, 180
CviKI_1 RGCY 4 cut(s) 8, 21, 89, 180
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
EaeI YGGCCR 1 cut(s) 87
Ecl136II GAGCTC 2 cut(s) 8, 21
Eco24I GRGCYC 2 cut(s) 10, 23
Eco53kI GAGCTC 2 cut(s) 8, 21
Eco91I GGTNACC 1 cut(s) 154
EcoICRI GAGCTC 2 cut(s) 8, 21
EcoO65I GGTNACC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 2 cut(s) 10, 23
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 60
FaiI YATR 4 cut(s) 28, 58, 183, 306
FatI CATG 1 cut(s) 56
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 2 cut(s) 10, 23
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 60
HinfI GANTC 4 cut(s) 46, 52, 121, 185
HphI GGTGA 4 cut(s) 148, 184, 238, 280
Hpy188I TCNGA 4 cut(s) 12, 51, 73, 298
Hpy188III TCNNGA 1 cut(s) 211
Hpy99I CGWCG 4 cut(s) 16, 19, 110, 164
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 169, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 20, 71, 98, 196, 208
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 154, 286
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 2 cut(s) 160, 261
MhlI GDGCHC 2 cut(s) 10, 23
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 6 cut(s) 92, 93, 138, 185, 301, 304
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 154, 286
PaqCI CACCTGC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 3 cut(s) 52, 121, 185
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 220
Psp124BI GAGCTC 2 cut(s) 10, 23
Psp6I CCWGG 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 84
SacI GAGCTC 2 cut(s) 10, 23
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 10, 23
SetI ASST 7 cut(s) 10, 23, 84, 197, 210, 222, 293
Sse9I AATT 1 cut(s) 200
SstI GAGCTC 2 cut(s) 10, 23
StyD4I CCNGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 23, 44, 108
TasI AATT 1 cut(s) 200
TfiI GAWTC 3 cut(s) 52, 121, 185
TseFI GTSAC 2 cut(s) 154, 286
Tsp45I GTSAC 2 cut(s) 154, 286
TspGWI ACGGA 2 cut(s) 177, 226
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.