pycom05g20740

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
23496101 .. 23497033
933 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGGGTCCAGATTTCAGAGTTCTGGTTCGGAAAAGTAGGAAACAGGCGGAGCAATATCATCAGTTGTATAAAGAACCTATCCCTGTTACACAACTAGTGAGGGAAGTTGCTGCTGTTATGCAGGAGTTCACACAGTCGGGTATTGGGTGTAAGGCCTTTTGGAGTTTCACTGCTGGTTGCCGGCTTTGA

Protein Analysis

63

Amino Acids

7.13

Weight (kDa)

9.51

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 2 - 47 1.6e-07 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 94
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 97
BcuI ACTAGT 1 cut(s) 94
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 180
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 181
BsnI GGCC 1 cut(s) 155
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 5
CviJI RGCY 2 cut(s) 155, 184
CviKI_1 RGCY 2 cut(s) 155, 184
EciI GGCGGA 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 5
FaiI YATR 2 cut(s) 69, 119
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 181
HpaII CCGG 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 17, 30
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 121
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 8, 21, 29, 96, 107, 159
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 85
MnlI CCTC 1 cut(s) 93
MroNI GCCGGC 1 cut(s) 180
MspI CCGG 1 cut(s) 181
NaeI GCCGGC 1 cut(s) 182
NgoMIV GCCGGC 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 6
PceI AGGCCT 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
SatI GCNGC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 5
SetI ASST 1 cut(s) 79
SgeI CNNG 7 cut(s) 20, 35, 56, 95, 107, 134, 150
SinI GGWCC 1 cut(s) 5
SpeI ACTAGT 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 155
TaaI ACNGT 1 cut(s) 135
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 110
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 5
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.