pycom05g21050

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
23739680 .. 23740123
444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGAAGATTTCAATGCTTGGCTCTCCTTCCCCTTGCAAGAGAACCTCAACCATGATCTCGCCATTCGGAGGTTTTGTCCGGCGCGAGTTGAGCAAGAACAAGGAGGAGGTGGAGGTGGAGGTGGAGAGTGGGATGAAATGCTAAATGAGATTGAGTTTTCTTCATCCTCTCACACCACTAGCACTCCATGCTTGCCTCCTTCAGAGGTTGACGACTTCGTCGATAGCTTCATCAACATGGATCATTGCATTGATGATCATGACATTCAGTCCATGGAGAAACAACGAAGTAGTAGTAGTATTGAGTACTATGATCAAGATGGGATTGAGACATTTTCAATGGCGGATGATCTGTATGGAGATGTTCTGATGATGATGGAGGAAGAAGATCGATCATGTGGATATGAGTGGCTTGGCGGAAGATTTTCGGGTTGCAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

4.05

Isoelectric Point (pI)

74.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccII CGCG 1 cut(s) 85
AciI CCGC 2 cut(s) 344, 417
AclWI GGATC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 13, 339
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 85
BccI CCATC 2 cut(s) 314, 370
BclI TGATCA 2 cut(s) 256, 313
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 180
BmcAI AGTACT 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 139, 164, 352
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 391
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 323
Bsp143I GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 2 cut(s) 344, 417
BspDI ATCGAT 1 cut(s) 391
BspFNI CGCG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
BssT1I CCWWGG 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 139, 164, 352
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 7 cut(s) 58, 244, 259, 316, 352, 391, 395
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
BstMWI GCNNNNNNNGC 2 cut(s) 91, 189
BstUI CGCG 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 391
BsuTUI ATCGAT 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 139, 164, 352
Cac8I GCNNGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 1 cut(s) 307
CviAII CATG 6 cut(s) 53, 189, 238, 260, 274, 396
CviJI RGCY 3 cut(s) 22, 228, 412
CviKI_1 RGCY 3 cut(s) 22, 228, 412
CviQI GTAC 1 cut(s) 307
DpnI GATC 7 cut(s) 57, 243, 258, 315, 351, 390, 394
DpnII GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
DrdI GACNNNNNNGTC 1 cut(s) 218
DriI GACNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1105I GACNNNNNGTC 1 cut(s) 268
EciI GGCGGA 2 cut(s) 359, 432
Eco130I CCWWGG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 6 cut(s) 56, 192, 241, 263, 277, 399
FaiI YATR 9 cut(s) 54, 190, 239, 261, 275, 312, 357, 397, 405
FatI CATG 6 cut(s) 52, 188, 237, 259, 273, 395
FbaI TGATCA 2 cut(s) 256, 313
FokI GGATG 3 cut(s) 146, 151, 359
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 84
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 85
Hin1II CATG 6 cut(s) 56, 192, 241, 263, 277, 399
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 69, 205, 369
Hpy188III TCNNGA 2 cut(s) 260, 317
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 37, 210
HpyCH4V TGCA 3 cut(s) 37, 249, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 189
Hsp92II CATG 6 cut(s) 56, 192, 241, 263, 277, 399
HspAI GCGC 1 cut(s) 83
Ksp22I TGATCA 2 cut(s) 256, 313
Kzo9I GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
LpnPI CCDG 1 cut(s) 93
MaeI CTAG 1 cut(s) 180
MalI GATC 7 cut(s) 57, 243, 258, 315, 351, 390, 394
MboI GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
MboII GAAGA 5 cut(s) 17, 153, 395, 398, 432
MroXI GAANNNNTTC 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 91, 189
NcoI CCATGG 1 cut(s) 273
NdeII GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
NlaIII CATG 6 cut(s) 56, 192, 241, 263, 277, 399
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 424
PflFI GACNNNGTC 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 236
Sau3AI GATC 7 cut(s) 55, 241, 256, 313, 349, 388, 392
ScaI AGTACT 1 cut(s) 308
SetI ASST 7 cut(s) 48, 74, 112, 118, 124, 210, 230
SmiMI CAYNNNNRTG 1 cut(s) 236
SsiI CCGC 2 cut(s) 344, 417
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 2 cut(s) 222, 391
TatI WGTACW 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 150, 153, 220
Tth111I GACNNNGTC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 424
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.