pycom05g21300

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
23962271 .. 23962755
485 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGGTCTTAAGATTTCACAAAGCTGCAAGAGTGGGAAATTTGAAGGTCACATACGAAAAGTACTCTAGCCCTGATCTCAGTGGCGTTTGCAGCAGTAAAACCATTGGAGATGCTTCCACTCCGATTCAGGCATCCATCAAGCTTGTCGTAAAGAAGCCATATTTCGTAGCGCTTCTACTGATGGCGTCTGTTTACTCTAGGGTTTTCAGGATTACAAAATTCTTTTGTTCATTTGGTACTGCAGTTCACATCGCTATTGCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.62

Weight (kDa)

10.02

Isoelectric Point (pI)

21.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 37, 218
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 62, 238
AfeI AGCGCT 1 cut(s) 171
AflII CTTAAG 1 cut(s) 7
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 23, 142
AluI AGCT 2 cut(s) 23, 142
Aor51HI AGCGCT 1 cut(s) 171
ApeKI GCWGC 3 cut(s) 23, 90, 260
ApoI RAATTY 2 cut(s) 37, 218
AspLEI GCGC 1 cut(s) 172
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbvI GCAGC 3 cut(s) 10, 102, 247
BccI CCATC 2 cut(s) 143, 175
BfaI CTAG 2 cut(s) 66, 198
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 7
BisI GCNGC 3 cut(s) 24, 91, 261
BlsI GCNGC 3 cut(s) 25, 92, 262
BmcAI AGTACT 1 cut(s) 62
BmsI GCATC 2 cut(s) 100, 140
BsaHI GRCGYC 1 cut(s) 185
BseGI GGATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 91
BseXI GCAGC 3 cut(s) 10, 102, 247
Bsp143I GATC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 7
BssMI GATC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 90, 260
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 10, 102, 247
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 172
CseI GACGC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 61, 237
CviJI RGCY 4 cut(s) 23, 69, 142, 157
CviKI_1 RGCY 4 cut(s) 23, 69, 142, 157
CviQI GTAC 2 cut(s) 61, 237
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco47III AGCGCT 1 cut(s) 171
FaiI YATR 2 cut(s) 52, 160
Fnu4HI GCNGC 3 cut(s) 24, 91, 261
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 24, 91, 261
FspBI CTAG 2 cut(s) 66, 198
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 24, 91, 261
HaeII RGCGCY 1 cut(s) 173
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 193, 247
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 193, 247
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 26, 90, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 260
HpyF3I CTNAG 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 185
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 84, 113, 193
Lsp1109I GCAGC 3 cut(s) 10, 102, 247
LweI GCATC 2 cut(s) 100, 140
MaeI CTAG 2 cut(s) 66, 198
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MluCI AATT 2 cut(s) 37, 218
MseI TTAA 1 cut(s) 8
MspCI CTTAAG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 90, 260
NdeII GATC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 25, 92, 262
PstI CTGCAG 1 cut(s) 244
RsaI GTAC 2 cut(s) 62, 238
RsaNI GTAC 2 cut(s) 61, 237
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 3 cut(s) 24, 91, 261
Sau3AI GATC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 62
SetI ASST 3 cut(s) 25, 48, 144
SfaNI GCATC 2 cut(s) 100, 140
SfcI CTRYAG 1 cut(s) 240
SgeI CNNG 8 cut(s) 39, 78, 83, 140, 151, 155, 210, 220
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 37, 218
SspMI CTAG 2 cut(s) 66, 198
TasI AATT 2 cut(s) 37, 218
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 23, 90, 260
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 7
XapI RAATTY 2 cut(s) 37, 218
XspI CTAG 2 cut(s) 66, 198
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.