pycom05g21400

Ribosomal RNA large subunit methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
24054975 .. 24055343
369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGGGAAACCCGTAAACAGCTTACTTTTGGTGATGATAAAGATAAATCCTTTTCAGTTTGACACAGTGTTCTCCGAGCTGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGTGCAGCATCTTCTTCCAGTGTTGATAGGATGGGGCATGTACAATTCAGTCTCCATGTTCAGTTTTCAGCTGATGCAACTTGAAGAAGAATTAATGAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.44

Weight (kDa)

10.07

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 82
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 4 cut(s) 21, 79, 184, 214
AluI AGCT 4 cut(s) 21, 79, 184, 214
Alw26I GTCTC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 79, 118
AseI ATTAAT 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 43
BbvI GCAGC 2 cut(s) 66, 130
BccI CCATC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 80, 119
BlsI GCNGC 2 cut(s) 81, 120
BmsI GCATC 2 cut(s) 130, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 66, 130
BsgI GTGCAG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 153
BspACI CCGC 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 153
BsrI ACTGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 153
BstF5I GGATG 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 66, 130
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 2 cut(s) 72, 138
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 151, 169
CviJI RGCY 4 cut(s) 21, 79, 184, 214
CviKI_1 RGCY 4 cut(s) 21, 79, 184, 214
CviQI GTAC 1 cut(s) 154
FaeI CATG 2 cut(s) 154, 172
FaiI YATR 2 cut(s) 152, 170
FatI CATG 2 cut(s) 150, 168
Fnu4HI GCNGC 2 cut(s) 80, 119
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 80, 119
GluI GCNGC 2 cut(s) 80, 119
Hin1II CATG 2 cut(s) 154, 172
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 118, 190
Hsp92II CATG 2 cut(s) 154, 172
LpnPI CCDG 1 cut(s) 144
Lsp1109I GCAGC 2 cut(s) 66, 130
LweI GCATC 2 cut(s) 130, 177
MboII GAAGA 4 cut(s) 116, 119, 209, 212
MluCI AATT 2 cut(s) 157, 203
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 184
NlaIII CATG 2 cut(s) 154, 172
NspI RCATGY 1 cut(s) 154
PkrI GCNGC 2 cut(s) 81, 120
PshBI ATTAAT 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 2 cut(s) 80, 119
SetI ASST 5 cut(s) 23, 81, 115, 186, 216
SfaNI GCATC 2 cut(s) 130, 177
SfcI CTRYAG 1 cut(s) 215
SgeI CNNG 6 cut(s) 23, 88, 143, 163, 181, 206
Sse9I AATT 2 cut(s) 157, 203
SsiI CCGC 1 cut(s) 82
TaaI ACNGT 1 cut(s) 67
TasI AATT 2 cut(s) 157, 203
TatI WGTACW 1 cut(s) 153
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 2 cut(s) 72, 138
TseI GCWGC 2 cut(s) 79, 118
TspRI CASTG 2 cut(s) 72, 138
VspI ATTAAT 1 cut(s) 206
XceI RCATGY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.