pycom05g21530

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
24129846 .. 24130510
665 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGGACAGGGTTGCAAATAGGGTTCGAGCTGGTGTCTTTTTTCATGAGCTATTTCCCACTTGCGTGAGGAACTCGGCTCTTTCGATGGTGAGGCAGGCGGTGGTGTTAGGAGGCGCTTTTAGTCCCATGCTGGCGGCCGCGGGGAGAGACAACGGTGGGTTTTTGTCGTATGGAGTGTTTGGGGTTGTGGTTGGGGTTTGCGGGGGTTTTGTGGTTTGTTTGCCAGAGACAAGAGGGAGAGGAATTTGTGATACGATGGATGAAGAAGATGATTTCCCAACTTATTTGTTCTTTGTCTTGAAAGGCTCTCTTAAAATATCTAAGGTTTGCGTTTTTGAGTGGTGGATGACATGTAGAGGTAGAGATTTTGGTTTGAATTGTCCTTCTATTAATACCCTATTTTGTTATTTAAAATTTAATAAATATTTCAAACTACAAAGAGCTTGTTTGATAATCATTTGGTTTTTAGTTTTTCAATTTCTGCTTTTTGTGCTTGAGATATGA

Protein Analysis

168

Amino Acids

18.85

Weight (kDa)

8.61

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 98, 134, 138, 140, 201
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 243, 413
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 4 cut(s) 301, 376, 430, 476
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 3 cut(s) 29, 49, 443
AluI AGCT 3 cut(s) 29, 49, 443
Alw26I GTCTC 2 cut(s) 141, 221
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 243, 413
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 100
BccI CCATC 2 cut(s) 79, 250
BcoDI GTCTC 2 cut(s) 141, 221
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 2 cut(s) 135, 138
BlsI GCNGC 2 cut(s) 136, 139
BsaJI CCNNGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 265, 351
BseX3I CGGCCG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 141, 221
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 1 cut(s) 137
BspACI CCGC 5 cut(s) 98, 134, 138, 140, 201
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 140
BspHI TCATGA 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 96, 132
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 265, 351
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMAI GTCTC 2 cut(s) 141, 221
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 354
BstUI CGCG 1 cut(s) 140
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 265, 351
Cac8I GCNNGC 2 cut(s) 96, 132
CciI TCATGA 1 cut(s) 43
CciNI GCGGCCGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 116
Cfr42I CCGCGG 1 cut(s) 141
CviAII CATG 3 cut(s) 44, 127, 351
CviJI RGCY 6 cut(s) 29, 49, 77, 137, 306, 443
CviKI_1 RGCY 6 cut(s) 29, 49, 77, 137, 306, 443
DdeI CTNAG 1 cut(s) 321
DraI TTTAAA 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
EclXI CGGCCG 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 135
FaeI CATG 3 cut(s) 47, 130, 354
FaiI YATR 5 cut(s) 45, 128, 171, 352, 502
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 108
FatI CATG 3 cut(s) 43, 126, 350
FauI CCCGC 2 cut(s) 133, 194
Fnu4HI GCNGC 2 cut(s) 135, 138
FokI GGATG 2 cut(s) 272, 358
Fsp4HI GCNGC 2 cut(s) 135, 138
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 135, 138
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 137
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 47, 130, 354
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HphI GGTGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 44, 298
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 47, 130, 354
HspAI GCGC 1 cut(s) 114
KspI CCGCGG 1 cut(s) 141
LpnPI CCDG 4 cut(s) 15, 80, 116, 237
MboII GAAGA 2 cut(s) 275, 278
MluCI AATT 4 cut(s) 243, 376, 413, 476
MnlI CCTC 6 cut(s) 60, 84, 104, 227, 233, 350
MseI TTAA 4 cut(s) 312, 390, 410, 417
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 140
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 490
NlaIII CATG 3 cut(s) 47, 130, 354
NmeAIII GCCGAG 1 cut(s) 53
NotI GCGGCCGC 1 cut(s) 135
NspI RCATGY 1 cut(s) 354
OliI CACNNNNGTG 1 cut(s) 62
PagI TCATGA 1 cut(s) 43
PciI ACATGT 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 2 cut(s) 136, 139
PscI ACATGT 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 62
SacII CCGCGG 1 cut(s) 141
SaqAI TTAA 4 cut(s) 312, 390, 410, 417
SatI GCNGC 2 cut(s) 135, 138
SetI ASST 5 cut(s) 31, 51, 327, 361, 445
Sfr303I CCGCGG 1 cut(s) 141
SgrBI CCGCGG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 4 cut(s) 243, 376, 413, 476
SsiI CCGC 5 cut(s) 98, 134, 138, 140, 201
SspI AATATT 1 cut(s) 425
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 25, 83
TasI AATT 4 cut(s) 243, 376, 413, 476
TauI GCSGC 2 cut(s) 137, 140
Tru1I TTAA 4 cut(s) 312, 390, 410, 417
Tru9I TTAA 4 cut(s) 312, 390, 410, 417
TspDTI ATGAA 2 cut(s) 32, 276
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 243, 413
XceI RCATGY 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.