Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24989094 .. 24990157

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGTTGTCTTGTCATGGAACTTAGACCAAAAGACTGGAGGAAGAAAATGAGCAACTATTCCATCTGTCAATATATACATAACCTAAAGCTCTCCATATATATAAGATTCATTTTACACTCGAATTCATTGCTAATTAAGGCGCATCAGGCTGCAGCATTTGGTCATGATCAGGCGCATCTTGAGGCTCATGAGCAGGTGGAGAATCTGGAGATGCTGCCGAAATCTGAAGAGCGTCGATATGTGCTCGATCAATTCCCATTTGGAGGTGAAGAACAACCAAGCAGTGTGCTTCAGCTTGCTACTTTGCAGCCTCAGCCTCAGTTCAACCCTTACCCTCACCAGCCTGATCGATCATCATCCCGGCCTTCTCGATTTCAATCTGAGCGGCCCTTCTATGTACGGTACGTATGCAGCAGTTTTATATACTATATGATCACGATCACACAAAGACAGTTCTTTTTACTTCTTTATAACAACATGTTCCTATTTACAACTATGCTCTGGCATGCGTTAAAAAAGGATATATATGACTTGTTAAGAATATTATCTGATCAGTTTACTTTTGAATTTCTAGCAAAAGATGATGTTGGTTTTTTACTAATATTTTACATACAATTAATATTATTGGGGCTCTGGTTACAATATTTACATTATTTAGTCTACGACGATATCAAAGAATTCAATGTAGTGACTTGTTTTGGTCTTGATTTGTTTGCCTACATTTTGAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

246

Amino Acids

29.27

Weight (kDa)

6.75

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	1 cut(s)	388
AcsI	RAATTY	3 cut(s)	124, 569, 680
AcuI	CTGAAG	2 cut(s)	249, 278
AfaI	GTAC	2 cut(s)	402, 407
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	5 cut(s)	328, 380, 569, 685, 730
AluBI	AGCT	2 cut(s)	91, 298
AluI	AGCT	2 cut(s)	91, 298
Alw21I	GWGCWC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	365, 389
ApeKI	GCWGC	5 cut(s)	152, 155, 217, 310, 414
ApoI	RAATTY	3 cut(s)	124, 569, 680
AseI	ATTAAT	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	145, 178
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	281, 332
BanII	GRGCYC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	5 cut(s)	139, 167, 204, 322, 426
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BclI	TGATCA	3 cut(s)	169, 435, 553
BcnI	CCSGG	1 cut(s)	364
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	6 cut(s)	153, 156, 218, 311, 389, 415
BlsI	GCNGC	6 cut(s)	154, 157, 219, 312, 390, 416
Bme1390I	CCNGG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	154, 187, 204
BpmI	CTGGAG	2 cut(s)	58, 230
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	409
BsaBI	GATNNNNATC	3 cut(s)	358, 379, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	128
Bse8I	GATNNNNATC	3 cut(s)	358, 379, 440
BseCI	ATCGAT	1 cut(s)	352
BseGI	GGATG	1 cut(s)	359
BseJI	GATNNNNATC	3 cut(s)	358, 379, 440
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	3 cut(s)	329, 335, 375
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	5 cut(s)	139, 167, 204, 322, 426
BshFI	GGCC	2 cut(s)	367, 391
BshVI	ATCGAT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	266
BsnI	GGCC	2 cut(s)	367, 391
Bsp1286I	GDGCHC	2 cut(s)	249, 636
Bsp143I	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	2 cut(s)	367, 391
BspCNI	CTCAG	3 cut(s)	328, 334, 376
BspDI	ATCGAT	1 cut(s)	352
BspHI	TCATGA	2 cut(s)	166, 190
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	225
BsrBI	CCGCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
Bst4CI	ACNGT	2 cut(s)	405, 456
Bst6I	CTCTTC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	300, 510
BstDEI	CTNAG	4 cut(s)	23, 315, 321, 384
BstF5I	GGATG	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	145, 178
BstKTI	GATC	7 cut(s)	172, 253, 352, 356, 438, 444, 556
BstMBI	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 316
BstNSI	RCATGY	2 cut(s)	484, 512
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	153
BstSNI	TACGTA	1 cut(s)	409
BstV1I	GCAGC	5 cut(s)	139, 167, 204, 322, 426
BstXI	CCANNNNNNTGG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	367, 391
BsuTUI	ATCGAT	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	359
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	300, 510
CciI	TCATGA	2 cut(s)	166, 190
CfoI	GCGC	2 cut(s)	145, 178
Cfr13I	GGNCC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	352
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	401, 406
CviAII	CATG	5 cut(s)	16, 167, 191, 481, 509
CviQI	GTAC	2 cut(s)	401, 406
DdeI	CTNAG	4 cut(s)	23, 315, 321, 384
DpnI	GATC	7 cut(s)	171, 252, 351, 355, 437, 443, 555
DpnII	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco105I	TACGTA	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	673
Eco57I	CTGAAG	2 cut(s)	249, 278
EcoRI	GAATTC	2 cut(s)	124, 680
EcoRV	GATATC	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	5 cut(s)	19, 170, 194, 484, 512
FatI	CATG	5 cut(s)	15, 166, 190, 480, 508
FbaI	TGATCA	3 cut(s)	169, 435, 553
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	6 cut(s)	153, 156, 218, 311, 389, 415
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	6 cut(s)	153, 156, 218, 311, 389, 415
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	2 cut(s)	144, 177
GluI	GCNGC	6 cut(s)	153, 156, 218, 311, 389, 415
GsuI	CTGGAG	2 cut(s)	58, 230
HaeIII	GGCC	2 cut(s)	367, 391
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	145, 178
Hin1II	CATG	5 cut(s)	19, 170, 194, 484, 512
Hin6I	GCGC	2 cut(s)	143, 176
HinP1I	GCGC	2 cut(s)	143, 176
HinfI	GANTC	2 cut(s)	108, 205
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	281, 332
Hpy166II	GTNNAC	2 cut(s)	561, 664
Hpy188I	TCNGA	3 cut(s)	229, 385, 553
Hpy188III	TCNNGA	7 cut(s)	167, 182, 191, 209, 372, 439, 707
Hpy8I	GTNNAC	2 cut(s)	561, 664
Hpy99I	CGWCG	2 cut(s)	240, 671
HpyAV	CCTTC	2 cut(s)	378, 403
HpyCH4III	ACNGT	2 cut(s)	405, 456
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	155, 310, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 316
HpyF3I	CTNAG	4 cut(s)	23, 315, 321, 384
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	5 cut(s)	19, 170, 194, 484, 512
HspAI	GCGC	2 cut(s)	143, 176
Ksp22I	TGATCA	3 cut(s)	169, 435, 553
Kzo9I	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
LguI	GCTCTTC	1 cut(s)	225
Lsp1109I	GCAGC	5 cut(s)	139, 167, 204, 322, 426
LweI	GCATC	3 cut(s)	154, 187, 204
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	639, 691
MalI	GATC	7 cut(s)	171, 252, 351, 355, 437, 443, 555
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
MboII	GAAGA	3 cut(s)	55, 242, 284
MhlI	GDGCHC	2 cut(s)	249, 636
MluCI	AATT	6 cut(s)	124, 135, 254, 569, 617, 680
MnlI	CCTC	6 cut(s)	33, 178, 260, 324, 330, 348
MseI	TTAA	4 cut(s)	138, 515, 539, 620
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	2 cut(s)	149, 316
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
NlaIII	CATG	5 cut(s)	19, 170, 194, 484, 512
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	2 cut(s)	484, 512
PaeI	GCATGC	1 cut(s)	512
PagI	TCATGA	2 cut(s)	166, 190
PaqCI	CACCTGC	1 cut(s)	187
PciI	ACATGT	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	108, 205
PkrI	GCNGC	6 cut(s)	154, 157, 219, 312, 390, 416
Ppu21I	YACGTR	1 cut(s)	409
PscI	ACATGT	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	620
PsiI	TTATAA	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	402, 407
RsaNI	GTAC	2 cut(s)	401, 406
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	138, 515, 539, 620
SatI	GCNGC	6 cut(s)	153, 156, 218, 311, 389, 415
Sau3AI	GATC	7 cut(s)	169, 250, 349, 353, 435, 441, 553
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	249, 636
SetI	ASST	6 cut(s)	87, 93, 201, 271, 300, 411
SfaNI	GCATC	3 cut(s)	154, 187, 204
SfcI	CTRYAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SnaBI	TACGTA	1 cut(s)	409
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	6 cut(s)	124, 135, 254, 569, 617, 680
SsiI	CCGC	1 cut(s)	388
SspI	AATATT	4 cut(s)	546, 606, 624, 647
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	405, 456
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	5 cut(s)	122, 238, 249, 352, 373
TasI	AATT	6 cut(s)	124, 135, 254, 569, 617, 680
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	108, 205
Tru1I	TTAA	4 cut(s)	138, 515, 539, 620
Tru9I	TTAA	4 cut(s)	138, 515, 539, 620
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	5 cut(s)	152, 155, 217, 310, 414
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	100, 117
TspRI	CASTG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	3 cut(s)	124, 569, 680
XceI	RCATGY	2 cut(s)	484, 512
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.