pycom05g23060

Peptidase, trypsin-like serine and cysteine proteases

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
25109560 .. 25109811
252 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGCACGGTGACTTTCGCATAGAAAATGGTGTTGAAACTGCTCCTAATGTAGAACACCAATTCATTCCCAGTGCCACCAACAGATCTCCAATAAATCAAAGCAATCAAGAGGAACATCCGGTATCAAAAAACCTTTTGGCATTGCAGAGTAGCTCGGATGAAGAGATTTCTGTTTCGTTGCAGTTAGGTGAACCTGAATCGAAGAGAAGAAAAAACTGCAACTCTCTCTTTGGCAGTCAAGGAACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.16

Weight (kDa)

5.22

Isoelectric Point (pI)

79.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 20, 200
BglII AGATCT 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 140
BseGI GGATG 2 cut(s) 115, 163
BseMI GCAATG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 119
Bsp143I GATC 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 69
BssMI GATC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 156, 197
BstF5I GGATG 2 cut(s) 115, 163
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BtsCI GGATG 2 cut(s) 115, 163
BtsIMutI CAGTG 1 cut(s) 76
CviJI RGCY 1 cut(s) 153
CviKI_1 RGCY 1 cut(s) 153
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Eam1104I CTCTTC 2 cut(s) 156, 197
EarI CTCTTC 2 cut(s) 156, 197
FaiI YATR 1 cut(s) 20
FokI GGATG 2 cut(s) 102, 170
HapII CCGG 1 cut(s) 119
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 20, 200
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 4, 145, 181, 219
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 82, 132, 207
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 173, 214, 219
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 1 cut(s) 83
MluCI AATT 2 cut(s) 59, 247
MnlI CCTC 1 cut(s) 103
MspI CCGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 247
NdeII GATC 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 83
Sau3AI GATC 1 cut(s) 83
SetI ASST 4 cut(s) 135, 155, 190, 196
SgeI CNNG 6 cut(s) 17, 81, 119, 131, 166, 206
Sse9I AATT 2 cut(s) 59, 247
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 200
TasI AATT 2 cut(s) 59, 247
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 52, 174
TspRI CASTG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.