pycom05g23310

Belongs to the DOCK family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
25217001 .. 25218094
1094 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGAAAAGTGCAGTTTGGCATATCAAATCAACCTGCCGCTTTCTTGGGACTCTAATTCTTAGGAATTCAGACAGGCAGGATGCGGATACTTCTGACTTTATCGAGTCCCCATCATCATCAGTTTGTCTGCTATTGCAGTTAGAGAAGCATTCCACAGAAGAAGGCGGGGTTACACCTTCAGTTTATTCGTGCAGAGAACCAGTATGTCCAAAAATATATGTTACTCGATTCTTAAAAACTTTATGGCATGACAAAATAAATTTACAAATTGCTAATTTTTCTGTTTTGTATAAAATCTTTGTTCACTCTACCTGA

Protein Analysis

105

Amino Acids

11.88

Weight (kDa)

8.4

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 41
AciI CCGC 3 cut(s) 37, 83, 165
AcsI RAATTY 2 cut(s) 64, 259
AcuI CTGAAG 1 cut(s) 162
ApoI RAATTY 2 cut(s) 64, 259
BccI CCATC 1 cut(s) 118
BciVI GTATCC 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 41
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmsI GCATC 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 200
BsgI GTGCAG 2 cut(s) 30, 211
BslFI GGGAC 2 cut(s) 61, 91
BsmFI GGGAC 2 cut(s) 61, 91
BsmI GAATGC 1 cut(s) 148
BspACI CCGC 3 cut(s) 37, 83, 165
BspMI ACCTGC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 85
BsuI GTATCC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 85
BveI ACCTGC 1 cut(s) 41
CviAII CATG 1 cut(s) 248
DdeI CTNAG 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 64
FaeI CATG 1 cut(s) 251
FaiI YATR 7 cut(s) 21, 205, 217, 219, 244, 249, 291
FaqI GGGAC 2 cut(s) 61, 91
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 251
HinfI GANTC 3 cut(s) 49, 104, 228
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 70, 94
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 155, 186
HpyCH4V TGCA 3 cut(s) 11, 136, 192
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 251
LpnPI CCDG 4 cut(s) 46, 58, 62, 213
LweI GCATC 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 169, 220
MboII GAAGA 1 cut(s) 170
MluCI AATT 5 cut(s) 54, 64, 259, 267, 274
MlyI GAGTC 2 cut(s) 43, 113
MseI TTAA 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 251
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 2 cut(s) 43, 112
PpsI GAGTC 2 cut(s) 43, 112
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 37
SchI GAGTC 2 cut(s) 43, 113
SetI ASST 3 cut(s) 35, 178, 314
SfaNI GCATC 1 cut(s) 70
Sse9I AATT 5 cut(s) 54, 64, 259, 267, 274
SsiI CCGC 3 cut(s) 37, 83, 165
TaqI TCGA 2 cut(s) 102, 226
TasI AATT 5 cut(s) 54, 64, 259, 267, 274
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 64, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.