pycom05g23400

zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
25309287 .. 25311975
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1386 bp
ATGGTCCAACAAATTATTCATGCAGGACAACTTTTTTATACTTTGCAAAAGTCTTGTAACGATGTTGTGTTTTTAACCACCTCTCATATGCAACCTAGCAATGACATCACTGTTGAAGGAGCTAGGTTAGAAGAAGACACTATGGAATTAAATTGGACAGCATTCAACTCCTCAACAAAATGTGTAATTGCATCCCCATATTACAGTGCATCTATAGCAAGAACCTGGAGAACAGTGAACAAAAAACCCCATTGGGAACCAGGAAGAGCCGTTTCTAAAAGGCTTTTAAAACCCAAATTTGTGTTCATCCAAGTCAGAAAGTGGTTTATATTTTTTTTATTAATATTTTTTCTGTCAATTTTATCCGACAAGAATGCTTTTATTTATATTATTAATAAATTCTTTGTCGGTTATATCCGAAACAAAGAATGCTCTTATTTATTCATTATTAATATATTCTATGTCGGCTATATCCGACACAACAATTCTGTCGCTTATTATCTCCGCCACTGCATCCATTTTCTGTCTGATGTTCATAACGACGCTAATAAATGGTTTCGTAGTAGTGCTGCTCAGTTAATGCAAGTTAAAGCCAACGGTAATATGCTCGTGATCATTTGCTTCACGTCGTCTATCAAAACCGATGAGAGCTGTTGGAAAGTGAAAATAAAGATAACAAGGAATCGATCCTATACACATTGTGAGGTATTTAAAATTGGGCCACCAATTATCATATTTTTCAGTGTAGATACCCAACTCTCATATTTCCTTAAATGGTTGTGTATTGGCACTTTGACAGTACTCTTGCTTTTCGATGAAGATTTTATACACAAGGAAATGTTTAATGGATACAAAATAAGTAAGGGATTTAACTTTTACTGCAATGTGAAAGAATTTATGGGTTTTAAAGAAGATGTTGGAACCAAAATTGGATATTTTGGTAAGAAAATAAAAAGTATATGTCCCTGCATAACTATATCTAAAGGCAATGTGTTGAAAACATTGGCAGTGTTGAAAATATTTGGCAGAATAATGAATGCCCACACAGATTTTCAATACCCACACAGTAATGTGGACTTTGGAAATGAAGGAGATCAGTGCTCTGTGTACTATCAAAATACAGAGAAAAGGAAAGATAAACAACATCAGTATCTATCCGTTTCTCTTTTATTTGTCATTCCCTTATGTTATAGTTACAGTGTGATATCTTACGCTTACTTCGCTTATGTCACTAGTAAAGAAAAGAAAATGATGAACTTGGCAAAGCTTGATTTTGTTACCCTGGACATTACTAGGAAGAACTTTCTTACCTGGGTAGTAGATACCAAGATCGATCGATTATTTGGAGGCAAGGAATCTTGGAGAAACAATCAAGGAGGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

53.78

Weight (kDa)

9.35

Isoelectric Point (pI)

21.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 505
AclWI GGATC 1 cut(s) 681
AcsI RAATTY 3 cut(s) 296, 398, 893
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 2 cut(s) 801, 1109
AgsI TTSAA 5 cut(s) 116, 166, 997, 1015, 1055
AhlI ACTAGT 1 cut(s) 1232
AjiI CACGTC 1 cut(s) 627
AjnI CCWGG 4 cut(s) 224, 259, 1281, 1310
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 287, 319
AluBI AGCT 3 cut(s) 122, 651, 1267
AluI AGCT 3 cut(s) 122, 651, 1267
Alw21I GWGCWC 1 cut(s) 1103
AlwI GGATC 1 cut(s) 681
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 3 cut(s) 296, 398, 893
AseI ATTAAT 3 cut(s) 341, 393, 450
AspS9I GGNCC 2 cut(s) 4, 719
AvaII GGWCC 1 cut(s) 4
BaeI ACNNNNGTAYC 2 cut(s) 1133, 1166
BarI GAAGNNNNNNTAC 2 cut(s) 810, 842
BauI CACGAG 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 1103
BbvI GCAGC 1 cut(s) 556
BceAI ACGGC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 4 cut(s) 226, 261, 1283, 1312
BciVI GTATCC 1 cut(s) 842
BclI TGATCA 1 cut(s) 612
BcuI ACTAGT 1 cut(s) 1232
BfaI CTAG 4 cut(s) 96, 123, 1233, 1293
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 842
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 4 cut(s) 226, 261, 1283, 1312
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 4, 719
BmiI GGNNCC 2 cut(s) 258, 922
BmrFI CCNGG 4 cut(s) 226, 261, 1283, 1312
BmsI GCATC 3 cut(s) 200, 218, 522
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 247
Bsa29I ATCGAT 3 cut(s) 685, 1332, 1336
BsaJI CCNNGG 2 cut(s) 1281, 1311
Bse3DI GCAATG 3 cut(s) 106, 889, 994
BseBI CCWGG 4 cut(s) 226, 261, 1283, 1312
BseCI ATCGAT 3 cut(s) 685, 1332, 1336
BseDI CCNNGG 2 cut(s) 1281, 1311
BseGI GGATG 3 cut(s) 191, 306, 513
BseMI GCAATG 3 cut(s) 106, 889, 994
BseMII CTCAG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 556
Bsh1285I CGRYCG 1 cut(s) 1336
BshFI GGCC 1 cut(s) 721
BshVI ATCGAT 3 cut(s) 685, 1332, 1336
BsiEI CGRYCG 1 cut(s) 1336
BsiHKAI GWGCWC 1 cut(s) 1103
BslFI GGGAC 1 cut(s) 948
BsmFI GGGAC 1 cut(s) 948
BsmI GAATGC 4 cut(s) 161, 379, 434, 1042
BsnI GGCC 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 1103
Bsp143I GATC 5 cut(s) 612, 686, 1093, 1329, 1333
BspACI CCGC 1 cut(s) 505
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 1 cut(s) 586
BspDI ATCGAT 3 cut(s) 685, 1332, 1336
BspLI GGNNCC 2 cut(s) 258, 922
BspPI GGATC 1 cut(s) 681
BspQI GCTCTTC 1 cut(s) 259
BsrDI GCAATG 3 cut(s) 106, 889, 994
BssECI CCNNGG 2 cut(s) 1281, 1311
BssMI GATC 5 cut(s) 612, 686, 1093, 1329, 1333
BssSI CACGAG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 608
Bst2UI CCWGG 4 cut(s) 226, 261, 1283, 1312
Bst4CI ACNGT 7 cut(s) 112, 206, 235, 599, 799, 1067, 1199
Bst6I CTCTTC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 573
BstF5I GGATG 3 cut(s) 191, 306, 513
BstKTI GATC 5 cut(s) 615, 689, 1096, 1332, 1336
BstMBI GATC 5 cut(s) 612, 686, 1093, 1329, 1333
BstMCI CGRYCG 1 cut(s) 1336
BstMWI GCNNNNNNNGC 2 cut(s) 215, 1220
BstNI CCWGG 4 cut(s) 226, 261, 1283, 1312
BstSCI CCNGG 4 cut(s) 224, 259, 1281, 1310
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 141
Bsu15I ATCGAT 3 cut(s) 685, 1332, 1336
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 1 cut(s) 721
BsuTUI ATCGAT 3 cut(s) 685, 1332, 1336
BtrI CACGTC 1 cut(s) 627
BtsCI GGATG 3 cut(s) 191, 306, 513
BtsI GCAGTG 2 cut(s) 508, 1014
BtsIMutI CAGTG 8 cut(s) 108, 211, 240, 508, 748, 1014, 1103, 1204
Cfr13I GGNCC 2 cut(s) 4, 719
ClaI ATCGAT 3 cut(s) 685, 1332, 1336
CseI GACGC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 800, 1108
CviAII CATG 1 cut(s) 20
CviJI RGCY 8 cut(s) 122, 269, 283, 468, 593, 651, 721, 1267
CviKI_1 RGCY 8 cut(s) 122, 269, 283, 468, 593, 651, 721, 1267
CviQI GTAC 2 cut(s) 800, 1108
DdeI CTNAG 1 cut(s) 573
DpnI GATC 5 cut(s) 614, 688, 1095, 1331, 1335
DpnII GATC 5 cut(s) 612, 686, 1093, 1329, 1333
DraI TTTAAA 3 cut(s) 288, 712, 907
DraIII CACNNNGTG 1 cut(s) 701
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 494
Eco32I GATATC 1 cut(s) 1206
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 224, 259, 1281, 1310
EcoRV GATATC 1 cut(s) 1206
FaeI CATG 1 cut(s) 23
FaqI GGGAC 1 cut(s) 948
FatI CATG 1 cut(s) 19
FauNDI CATATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 3 cut(s) 178, 293, 500
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 4 cut(s) 96, 123, 1233, 1293
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 721
HgaI GACGC 1 cut(s) 551
Hin1II CATG 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 1265
HinfI GANTC 2 cut(s) 682, 1355
Hpy166II GTNNAC 3 cut(s) 238, 1075, 1108
Hpy188I TCNGA 5 cut(s) 317, 367, 419, 476, 529
Hpy188III TCNNGA 1 cut(s) 610
Hpy8I GTNNAC 3 cut(s) 238, 1075, 1108
Hpy99I CGWCG 2 cut(s) 545, 631
HpyAV CCTTC 2 cut(s) 110, 1082
HpyCH4III ACNGT 7 cut(s) 112, 206, 235, 599, 799, 1067, 1199
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 9 cut(s) 23, 46, 91, 191, 209, 513, 583, 882, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 1220
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 5 cut(s) 612, 686, 1093, 1329, 1333
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 3 cut(s) 200, 218, 522
MaeI CTAG 4 cut(s) 96, 123, 1233, 1293
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 4 cut(s) 56, 1193, 1228, 1276
MalI GATC 5 cut(s) 614, 688, 1095, 1331, 1335
MboI GATC 5 cut(s) 612, 686, 1093, 1329, 1333
MboII GAAGA 6 cut(s) 143, 146, 276, 830, 923, 1309
MhlI GDGCHC 1 cut(s) 1103
MmeI TCCRAC 5 cut(s) 31, 390, 499, 635, 898
MnlI CCTC 5 cut(s) 91, 181, 697, 1340, 1370
MslI CAYNNNNRTG 1 cut(s) 1068
MspR9I CCNGG 4 cut(s) 226, 261, 1283, 1312
Mva1269I GAATGC 4 cut(s) 161, 379, 434, 1042
MvaI CCWGG 4 cut(s) 226, 261, 1283, 1312
MwoI GCNNNNNNNGC 2 cut(s) 215, 1220
NdeI CATATG 1 cut(s) 87
NdeII GATC 5 cut(s) 612, 686, 1093, 1329, 1333
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 2 cut(s) 258, 922
NmuCI GTSAC 1 cut(s) 1228
PciSI GCTCTTC 1 cut(s) 259
PctI GAATGC 4 cut(s) 161, 379, 434, 1042
PfeI GAWTC 2 cut(s) 682, 1355
PkrI GCNGC 1 cut(s) 571
Ple19I CGATCG 1 cut(s) 1336
PshBI ATTAAT 3 cut(s) 341, 393, 450
Psp6I CCWGG 4 cut(s) 224, 259, 1281, 1310
PspGI CCWGG 4 cut(s) 224, 259, 1281, 1310
PspN4I GGNNCC 2 cut(s) 258, 922
PspPI GGNCC 2 cut(s) 4, 719
PvuI CGATCG 1 cut(s) 1336
RsaI GTAC 2 cut(s) 801, 1109
RsaNI GTAC 2 cut(s) 800, 1108
RseI CAYNNNNRTG 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 259
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 5 cut(s) 612, 686, 1093, 1329, 1333
Sau96I GGNCC 2 cut(s) 4, 719
ScaI AGTACT 1 cut(s) 801
ScrFI CCNGG 4 cut(s) 226, 261, 1283, 1312
SduI GDGCHC 1 cut(s) 1103
SfaNI GCATC 3 cut(s) 200, 218, 522
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 1068
SpeI ACTAGT 1 cut(s) 1232
SsiI CCGC 1 cut(s) 505
SspI AATATT 2 cut(s) 345, 1020
SspMI CTAG 4 cut(s) 96, 123, 1233, 1293
StyD4I CCNGG 4 cut(s) 224, 259, 1281, 1310
TaaI ACNGT 7 cut(s) 112, 206, 235, 599, 799, 1067, 1199
TaiI ACGT 1 cut(s) 629
TaqI TCGA 4 cut(s) 685, 813, 1332, 1336
TatI WGTACW 2 cut(s) 799, 1107
TfiI GAWTC 2 cut(s) 682, 1355
TscAI CASTG 8 cut(s) 115, 211, 240, 515, 748, 1014, 1103, 1204
TseFI GTSAC 1 cut(s) 1228
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 1228
TspDTI ATGAA 8 cut(s) 8, 295, 433, 524, 831, 1049, 1101, 1268
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 8 cut(s) 115, 211, 240, 515, 748, 1014, 1103, 1204
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 3 cut(s) 341, 393, 450
XapI RAATTY 3 cut(s) 296, 398, 893
XspI CTAG 4 cut(s) 96, 123, 1233, 1293
ZrmI AGTACT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.