pycom05g23610
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007324
Physical Location & Seq
Reverse (-)
25446202 .. 25447447
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 849 bp
ATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGATTTTGATAGAGGCAAAGAAGATGGATGATGAGAGAAGAATGAAGAGAACTGGTGGTGGGGAAGGTGGTAGTAGTGGTGGAGGAACTGATCAAACAACAAGATCAATGAGCAAACCAGCTGAGCTGAGGTGGAAATGGGTGGAGGACTACTGTTGGAAAAAAGGTTGTTTGAGAAACCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGATTACAAGAAAGTGAGAGAATATGAGAGGAAGATTACTAGTGTGGGAGAAGGGAAAGGAGAAGAAGGTAGTGCATCGTATTGGAAGCTTGAGAAGAATGAGAGGAAGGAGAGGAACTTGCCTACAAATATGGTGCCTCAGATTTATGAGGCTTTGGTGGATGTGGTGGAGAGGAGAGAAGCTGCTGCTGCTGCTGGTTATCAGATTAGAGGTCATGAGGTGGTGGGAGGAGCCTCTGTTTCTGGTCCAAATGTTGGGATTAATCCAAATATTGGGTATGGTTTGGAGAGGCCTATAATTAATACAACTAATGTTCATCAGCAGCCTTCTTCTTCACTGCCTTCTCCTCCAGTTTTGCAACATCATCATCATCATCAAATCTCAGTTCCAACAATTGCGGCATTGCCACTTCTTCCACCTGCTCCACTGGCAGCCCAACCACCACCTGCTCTCCCATACGCACAGGTTATGCCCACACAGATTCCGATACAAGTGAGCATTCAAACTCGCCAGCTAAAAGGAGGAGGAGGGCAAGTGGAAGAGGTGGCGGTGGTGGTGAAGATCAAGGAGGAACCAGTGGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

283

Amino Acids

31.32

Weight (kDa)

8.84

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 8 - 98 2.3e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 688, 715
Acc36I ACCTGC 2 cut(s) 688, 715
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 2 cut(s) 515, 533
AciI CCGC 2 cut(s) 659, 809
AfiI CCNNNNNNNGG 2 cut(s) 515, 533
AgsI TTSAA 1 cut(s) 764
AhlI ACTAGT 1 cut(s) 299
AluBI AGCT 5 cut(s) 164, 169, 349, 443, 775
AluI AGCT 5 cut(s) 164, 169, 349, 443, 775
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 1 cut(s) 551
ApeKI GCWGC 6 cut(s) 443, 446, 449, 452, 583, 692
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AseI ATTAAT 2 cut(s) 522, 561
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 829
AvaII GGWCC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 6 cut(s) 430, 433, 436, 439, 595, 704
BccI CCATC 1 cut(s) 61
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 10
BfuAI ACCTGC 2 cut(s) 688, 715
BisI GCNGC 7 cut(s) 444, 447, 450, 453, 584, 660, 693
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 7 cut(s) 445, 448, 451, 454, 585, 661, 694
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 3 cut(s) 396, 493, 834
BmsI GCATC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 371
BsaXI ACNNNNNCTCC 6 cut(s) 483, 513, 696, 726, 780, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 533
Bse1I ACTGG 6 cut(s) 29, 100, 229, 611, 693, 836
Bse3DI GCAATG 2 cut(s) 241, 662
BseGI GGATG 2 cut(s) 76, 427
BseLI CCNNNNNNNGG 2 cut(s) 515, 533
BseMI GCAATG 2 cut(s) 241, 662
BseMII CTCAG 4 cut(s) 156, 161, 413, 657
BseNI ACTGG 6 cut(s) 29, 100, 229, 611, 693, 836
BseRI GAGGAG 5 cut(s) 448, 504, 597, 798, 801
BseXI GCAGC 6 cut(s) 430, 433, 436, 439, 595, 704
BshFI GGCC 1 cut(s) 553
BshNI GGYRCC 1 cut(s) 394
BslFI GGGAC 2 cut(s) 20, 260
BslI CCNNNNNNNGG 2 cut(s) 515, 533
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 20, 260
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 1 cut(s) 553
Bsp143I GATC 3 cut(s) 133, 146, 822
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 2 cut(s) 659, 809
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 4 cut(s) 157, 162, 412, 656
BspHI TCATGA 2 cut(s) 255, 475
BspLI GGNNCC 3 cut(s) 396, 493, 834
BspMI ACCTGC 2 cut(s) 688, 715
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 241, 662
BsrI ACTGG 6 cut(s) 29, 100, 229, 611, 693, 836
BssMI GATC 3 cut(s) 133, 146, 822
Bst4CI ACNGT 3 cut(s) 31, 197, 846
Bst6I CTCTTC 2 cut(s) 83, 795
BstC8I GCNNGC 1 cut(s) 773
BstDEI CTNAG 4 cut(s) 165, 170, 399, 643
BstF5I GGATG 2 cut(s) 76, 427
BstKTI GATC 3 cut(s) 136, 149, 825
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 133, 146, 822
BstMWI GCNNNNNNNGC 3 cut(s) 449, 452, 689
BstSFI CTRYAG 1 cut(s) 10
BstV1I GCAGC 6 cut(s) 430, 433, 436, 439, 595, 704
BsuRI GGCC 1 cut(s) 553
BtsCI GGATG 2 cut(s) 76, 427
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 5 cut(s) 36, 236, 596, 686, 843
BveI ACCTGC 2 cut(s) 688, 715
Cac8I GCNNGC 1 cut(s) 773
CciI TCATGA 2 cut(s) 255, 475
Cfr13I GGNCC 1 cut(s) 506
CviAII CATG 2 cut(s) 256, 476
DdeI CTNAG 4 cut(s) 165, 170, 399, 643
DpnI GATC 3 cut(s) 135, 148, 824
DpnII GATC 3 cut(s) 133, 146, 822
Eam1104I CTCTTC 2 cut(s) 83, 795
EarI CTCTTC 2 cut(s) 83, 795
Eco147I AGGCCT 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 506
FaeI CATG 2 cut(s) 259, 479
FaiI YATR 9 cut(s) 257, 285, 392, 408, 477, 540, 557, 718, 731
FaqI GGGAC 2 cut(s) 20, 260
FatI CATG 2 cut(s) 255, 475
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 7 cut(s) 444, 447, 450, 453, 584, 660, 693
FokI GGATG 2 cut(s) 83, 434
Fsp4HI GCNGC 7 cut(s) 444, 447, 450, 453, 584, 660, 693
FspBI CTAG 1 cut(s) 300
GluI GCNGC 7 cut(s) 444, 447, 450, 453, 584, 660, 693
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 1 cut(s) 553
Hin1II CATG 2 cut(s) 259, 479
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 742
HphI GGTGA 1 cut(s) 829
Hpy188I TCNGA 3 cut(s) 402, 465, 747
Hpy188III TCNNGA 2 cut(s) 256, 476
HpyAV CCTTC 6 cut(s) 101, 305, 320, 361, 597, 612
HpyCH4III ACNGT 3 cut(s) 31, 197, 846
HpyCH4V TGCA 3 cut(s) 234, 335, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 452, 689
HpyF3I CTNAG 4 cut(s) 165, 170, 399, 643
Hsp92II CATG 2 cut(s) 259, 479
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 146, 822
LmnI GCTCC 2 cut(s) 491, 688
Lsp1109I GCAGC 6 cut(s) 430, 433, 436, 439, 595, 704
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 300
MalI GATC 3 cut(s) 135, 148, 824
MboI GATC 3 cut(s) 133, 146, 822
MfeI CAATTG 1 cut(s) 654
MluCI AATT 2 cut(s) 558, 654
MmeI TCCRAC 2 cut(s) 179, 674
MseI TTAA 2 cut(s) 522, 561
MspA1I CMGCKG 1 cut(s) 164
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 759
MwoI GCNNNNNNNGC 3 cut(s) 449, 452, 689
NdeII GATC 3 cut(s) 133, 146, 822
NlaIII CATG 2 cut(s) 259, 479
NlaIV GGNNCC 3 cut(s) 396, 493, 834
PagI TCATGA 2 cut(s) 255, 475
PaqCI CACCTGC 2 cut(s) 688, 715
PceI AGGCCT 1 cut(s) 553
PctI GAATGC 1 cut(s) 759
PfeI GAWTC 1 cut(s) 742
PflMI CCANNNNNTGG 2 cut(s) 515, 533
PkrI GCNGC 7 cut(s) 445, 448, 451, 454, 585, 661, 694
PshBI ATTAAT 2 cut(s) 522, 561
PspN4I GGNNCC 3 cut(s) 396, 493, 834
PspPI GGNCC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 522, 561
SatI GCNGC 7 cut(s) 444, 447, 450, 453, 584, 660, 693
Sau3AI GATC 3 cut(s) 133, 146, 822
Sau96I GGNCC 1 cut(s) 506
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 2 cut(s) 558, 654
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 2 cut(s) 659, 809
SspI AATATT 1 cut(s) 532
SspMI CTAG 1 cut(s) 300
StuI AGGCCT 1 cut(s) 553
TaaI ACNGT 3 cut(s) 31, 197, 846
TasI AATT 2 cut(s) 558, 654
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 1 cut(s) 742
Tru1I TTAA 2 cut(s) 522, 561
Tru9I TTAA 2 cut(s) 522, 561
TscAI CASTG 5 cut(s) 36, 236, 603, 693, 843
TseI GCWGC 6 cut(s) 443, 446, 449, 452, 583, 692
TspDTI ATGAA 2 cut(s) 101, 566
TspRI CASTG 5 cut(s) 36, 236, 603, 693, 843
Van91I CCANNNNNTGG 2 cut(s) 515, 533
VpaK11BI GGWCC 1 cut(s) 506
VspI ATTAAT 2 cut(s) 522, 561
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.