Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25576651 .. 25577303

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCCACGGAGGCTCAGATCTCGACCCAAGACGACAAATTGAAGGATGCCCAGATGGAGGTAGCTGATAAGCCTGAGAAAGTCGTGCTTCCAACCAACGAGTCCTCCGATAGCCTCATCACAATTCGACACACGTTTGTGTGCACACGTGATGGCCATGGCTGTTCAAAAAGCTCTTCCCGGATGCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

65

Amino Acids

7.08

Weight (kDa)

6.04

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 154
AcvI	CACGTG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	2 cut(s)	132, 146
AgsI	TTSAA	2 cut(s)	43, 168
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	65, 174
AluI	AGCT	2 cut(s)	65, 174
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	3, 154
ApaLI	GTGCAC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	146
BalI	TGGCCA	2 cut(s)	5, 156
BbrPI	CACGTG	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	146
BccI	CCATC	2 cut(s)	49, 146
BcnI	CCSGG	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	37, 174
BpuMI	CCSGG	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	6, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	6, 157
BseGI	GGATG	2 cut(s)	52, 189
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	29, 66
BseSI	GKGCMC	1 cut(s)	146
BshFI	GGCC	2 cut(s)	5, 156
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	5, 156
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	157
BspANI	GGCC	2 cut(s)	5, 156
BspCNI	CTCAG	2 cut(s)	28, 67
BspQI	GCTCTTC	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	6, 157
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	15, 75
BstDSI	CCRYGG	2 cut(s)	6, 157
BstF5I	GGATG	2 cut(s)	52, 189
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	5, 156
BtgI	CCRYGG	2 cut(s)	6, 157
BtsCI	GGATG	2 cut(s)	52, 189
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	8 cut(s)	5, 14, 65, 73, 114, 156, 162, 174
CviKI_1	RGCY	8 cut(s)	5, 14, 65, 73, 114, 156, 162, 174
DdeI	CTNAG	2 cut(s)	15, 75
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	2 cut(s)	3, 154
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	161
FaiI	YATR	1 cut(s)	159
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	1 cut(s)	157
FokI	GGATG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	5, 156
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	18, 109
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	134, 148
HpyCH4V	TGCA	2 cut(s)	144, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	15, 75
HpySE526I	ACGT	2 cut(s)	134, 148
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	181
LpnPI	CCDG	2 cut(s)	65, 87
LweI	GCATC	2 cut(s)	37, 174
MaeII	ACGT	2 cut(s)	134, 148
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	146
MlsI	TGGCCA	2 cut(s)	5, 156
MluCI	AATT	2 cut(s)	38, 123
MluNI	TGGCCA	2 cut(s)	5, 156
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	4, 52, 115, 125
Mox20I	TGGCCA	2 cut(s)	5, 156
MscI	TGGCCA	2 cut(s)	5, 156
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	2 cut(s)	5, 156
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	179
PleI	GAGTC	1 cut(s)	109
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	5 cut(s)	63, 67, 137, 151, 176
SfaNI	GCATC	2 cut(s)	37, 174
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	38, 123
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	157
TaiI	ACGT	2 cut(s)	137, 151
TaqI	TCGA	2 cut(s)	23, 127
TasI	AATT	2 cut(s)	38, 123
TspGWI	ACGGA	1 cut(s)	23
VneI	GTGCAC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.