pycom05g23930

threonine-tRNA ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
25578726 .. 25579035
310 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGGTGATGATGCCGCATATTTTGTCTAGAAGATCAGATCAAAGATGTATTAGGGGTGTCCTAGATCTTACCGAAGAACTTTTGTTGCAATTTGGCTTCATCAAATATGAGGTCAATCTCTCTACGAGGCCAGAGAAAGCTGTTGGAGATGATGATTTATGGGATAAAGGTTGGAGCTATTAA

Protein Analysis

61

Amino Acids

7.07

Weight (kDa)

5.15

Isoelectric Point (pI)

63.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AluBI AGCT 2 cut(s) 140, 177
AluI AGCT 2 cut(s) 140, 177
AoxI GGCC 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AsuHPI GGTGA 1 cut(s) 16
BfaI CTAG 2 cut(s) 27, 62
BglII AGATCT 1 cut(s) 64
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 130
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 32, 37, 64
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 130
BssMI GATC 3 cut(s) 32, 37, 64
BstKTI GATC 3 cut(s) 35, 40, 67
BstMBI GATC 3 cut(s) 32, 37, 64
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 1 cut(s) 130
CviJI RGCY 4 cut(s) 96, 130, 140, 177
CviKI_1 RGCY 4 cut(s) 96, 130, 140, 177
DpnI GATC 3 cut(s) 34, 39, 66
DpnII GATC 3 cut(s) 32, 37, 64
FaiI YATR 3 cut(s) 18, 108, 160
Fnu4HI GCNGC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 2 cut(s) 27, 62
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 130
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 32, 37, 64
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 1 cut(s) 144
MaeI CTAG 2 cut(s) 27, 62
MalI GATC 3 cut(s) 34, 39, 66
MboI GATC 3 cut(s) 32, 37, 64
MboII GAAGA 2 cut(s) 42, 86
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 124, 152
MnlI CCTC 2 cut(s) 103, 120
MseI TTAA 1 cut(s) 181
NdeII GATC 3 cut(s) 32, 37, 64
PkrI GCNGC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 64
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 32, 37, 64
SetI ASST 4 cut(s) 114, 142, 172, 179
SgeI CNNG 4 cut(s) 39, 74, 138, 143
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 14
SspMI CTAG 2 cut(s) 27, 62
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 26
XspI CTAG 2 cut(s) 27, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.