pycom05g24580

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
26108713 .. 26109359
647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGCATGGACAAAAGATACGACGGCGATAGGATTACTTATAAGGCCATCGGTGGTGTTGTGGACCTGTATTTCTTTGCCGGACCTACGCCTGAGTTGGTGGTGCAGCAGTATACTGAGCTCATTGGTCGGTCGCCCTGCCCCTATGCCCTATTGGTCTTTTGGATTCCACCAGAGCCGATATGGTTACAAGAATGTTTCGGATCTTGAAGGCGTGGTTGCTGGCTATGCAAATGCAAGTATCCCTCTTGAGGTTATGTGGAGAGACATTGATCACATGGATGCTTATAAGGACTTCACTCTTGATGCCTCAACTTTCCAGTCGATAAGATGCAGAATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00500 ko01100 map00052 map00500 map01100
Pfam Domains
Protein Families
Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

6.7

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_31_2nd PF01055 46 - 107 3e-20 Glycosyl hydrolases family 31 TIM-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 41, 288
AccI GTMKAC 1 cut(s) 112
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 210
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 63, 82
AvaII GGWCC 2 cut(s) 63, 82
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 39
BciVI GTATCC 1 cut(s) 251
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 258
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme18I GGWCC 2 cut(s) 63, 82
BmgT120I GGNCC 2 cut(s) 63, 82
BmsI GCATC 3 cut(s) 271, 295, 320
BpuEI CTTGAG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 83, 107
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 202, 271
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 84, 108
BspPI GGATC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 319
BssMI GATC 2 cut(s) 202, 271
BssNAI GTATAC 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 92, 116
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 205, 274
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 202, 271
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BstZ17I GTATAC 1 cut(s) 113
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 63, 82
CviAII CATG 2 cut(s) 6, 277
CviJI RGCY 4 cut(s) 46, 120, 177, 225
CviKI_1 RGCY 4 cut(s) 46, 120, 177, 225
DdeI CTNAG 2 cut(s) 92, 116
DpnI GATC 2 cut(s) 204, 273
DpnII GATC 2 cut(s) 202, 271
Ecl136II GAGCTC 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 63, 82
Eco53kI GAGCTC 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 2 cut(s) 9, 280
FaiI YATR 9 cut(s) 7, 41, 113, 146, 183, 228, 257, 278, 288
FatI CATG 2 cut(s) 5, 276
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 80
Hin1II CATG 2 cut(s) 9, 280
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 63, 113
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 206, 248, 302
Hpy8I GTNNAC 2 cut(s) 63, 113
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 105, 230, 236, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 92, 116
Hsp92II CATG 2 cut(s) 9, 280
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 202, 271
LpnPI CCDG 7 cut(s) 79, 93, 104, 150, 185, 207, 332
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 3 cut(s) 271, 295, 320
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 204, 273
MboI GATC 2 cut(s) 202, 271
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 1 cut(s) 336
MnlI CCTC 3 cut(s) 244, 255, 319
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 202, 271
NlaIII CATG 2 cut(s) 9, 280
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 107
PsiI TTATAA 2 cut(s) 41, 288
Psp124BI GAGCTC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 63, 82
PsuI RGATCY 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 122
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 2 cut(s) 202, 271
Sau96I GGNCC 2 cut(s) 63, 82
SduI GDGCHC 1 cut(s) 122
SetI ASST 4 cut(s) 68, 87, 122, 255
SfaNI GCATC 3 cut(s) 271, 295, 320
SinI GGWCC 2 cut(s) 63, 82
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 336
SstI GAGCTC 1 cut(s) 122
TaqI TCGA 1 cut(s) 323
TaqII GACCGA 1 cut(s) 119
TasI AATT 1 cut(s) 336
TfiI GAWTC 1 cut(s) 165
TseI GCWGC 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 63, 82
XapI RAATTY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.