Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26119634 .. 26122255

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGTGTTGCTACAAGAGGTATTGAACGTGAGATCGCATCTCTTCAGTTGGAGGAGAGGAAGTTGGTGGCAGAGATCAAGAAAACGGCTAAAACTGGAAACGAGGCAAGTTTACTTTTCCGTTTAAGTTACTCTTTCCTCGTACTGGTTAATGTGCGAATTAGCTATGAACGAATGTTCTGTAGGTTGGCTTGTGCAGTAAGCTGGCAAAACCCTGTCAGTCATGCATTATACGCAAGCACTTCTATTTCCACAGGCATGAAAGGTGCAACTAAAGCAATGGTAGCAATGAACAAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATTAGAGAATTCCAGAAGAACGCAGCACAAATGGATATGACGATAGAAATGATGTCAGAGTCTATTGATGAAACCTTGGACAAAGATGAGGCTGAAGAGGAAACAGAGGAGCTCACTAACCAGGTGCTCGATGAGATTGGTGTTGATATTGCATCCCAGGTTGGTGCTTTGAGATTGATAGCAACTCCAAAAGGCAGAATTGCATCGAGAAATACTGTAAATGTAGCTCCGAGGAATGCTGAAAATGTGGCTTCAAGGAATGCTGAAAATGTAGCTCCTAAGAATGCTGCAAATGTTGTTAACAGGTATGTCCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

216

Amino Acids

23.78

Weight (kDa)

7.74

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	4 - 160	4.1e-18	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	29, 441
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	26, 582
AjnI	CCWGG	2 cut(s)	447, 483
AluBI	AGCT	5 cut(s)	165, 204, 439, 554, 602
AluI	AGCT	5 cut(s)	165, 204, 439, 554, 602
Alw21I	GWGCWC	2 cut(s)	441, 456
ApeKI	GCWGC	2 cut(s)	350, 614
ApoI	RAATTY	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	441, 456
BbvI	GCAGC	2 cut(s)	362, 601
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	449, 485
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	351, 615
BlsI	GCNGC	2 cut(s)	352, 616
Bme1390I	CCNGG	2 cut(s)	449, 485
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	449, 485
BmsI	GCATC	3 cut(s)	47, 488, 539
BsaJI	CCNNGG	3 cut(s)	402, 483, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	100, 150
Bse3DI	GCAATG	2 cut(s)	285, 294
BseBI	CCWGG	2 cut(s)	449, 485
BseDI	CCNNGG	3 cut(s)	402, 483, 557
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	2 cut(s)	285, 294
BseNI	ACTGG	2 cut(s)	100, 150
BseRI	GAGGAG	2 cut(s)	68, 449
BseXI	GCAGC	2 cut(s)	362, 601
BsgI	GTGCAG	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	441, 456
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmI	GAATGC	3 cut(s)	568, 592, 616
Bsp1286I	GDGCHC	2 cut(s)	441, 456
Bsp143I	GATC	2 cut(s)	33, 75
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	285, 294
BsrI	ACTGG	2 cut(s)	100, 150
BssECI	CCNNGG	3 cut(s)	402, 483, 557
BssMI	GATC	2 cut(s)	33, 75
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	449, 485
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	2 cut(s)	48, 417
BstC8I	GCNNGC	2 cut(s)	206, 238
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	36, 78
BstMBI	GATC	2 cut(s)	33, 75
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 275, 284
BstNI	CCWGG	2 cut(s)	449, 485
BstSCI	CCNGG	2 cut(s)	447, 483
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	362, 601
BtsCI	GGATG	1 cut(s)	479
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	206, 238
CsiI	ACCWGGT	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	2 cut(s)	224, 259
CviJI	RGCY	9 cut(s)	89, 165, 191, 204, 419, 439, 554, 578, 602
CviKI_1	RGCY	9 cut(s)	89, 165, 191, 204, 419, 439, 554, 578, 602
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	2 cut(s)	35, 77
DpnII	GATC	2 cut(s)	33, 75
Eam1104I	CTCTTC	2 cut(s)	48, 417
EarI	CTCTTC	2 cut(s)	48, 417
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	2 cut(s)	29, 441
EcoICRI	GAGCTC	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	447, 483
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	227, 262
FaiI	YATR	6 cut(s)	168, 225, 232, 260, 365, 636
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	2 cut(s)	223, 258
Fnu4HI	GCNGC	2 cut(s)	351, 615
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	2 cut(s)	351, 615
GluI	GCNGC	2 cut(s)	351, 615
Hin1II	CATG	2 cut(s)	227, 262
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	1 cut(s)	386
HpaI	GTTAAC	1 cut(s)	628
Hpy166II	GTNNAC	2 cut(s)	113, 628
Hpy188I	TCNGA	2 cut(s)	385, 558
Hpy188III	TCNNGA	3 cut(s)	79, 340, 534
Hpy8I	GTNNAC	2 cut(s)	113, 628
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	7 cut(s)	197, 227, 269, 311, 479, 530, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 275, 284
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	227, 262
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	33, 75
LmnI	GCTCC	3 cut(s)	436, 559, 607
Lsp1109I	GCAGC	2 cut(s)	362, 601
LweI	GCATC	3 cut(s)	47, 488, 539
MabI	ACCWGGT	1 cut(s)	447
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	35, 77
MboI	GATC	2 cut(s)	33, 75
MboII	GAAGA	3 cut(s)	35, 355, 434
MhlI	GDGCHC	2 cut(s)	441, 456
MluCI	AATT	3 cut(s)	159, 335, 525
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	11, 46, 51, 97, 149, 409, 418, 427, 552
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	4 cut(s)	125, 150, 321, 627
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	449, 485
Mva1269I	GAATGC	3 cut(s)	568, 592, 616
MvaI	CCWGG	2 cut(s)	449, 485
MwoI	GCNNNNNNNGC	3 cut(s)	233, 275, 284
NdeII	GATC	2 cut(s)	33, 75
NlaIII	CATG	2 cut(s)	227, 262
NlaIV	GGNNCC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	316
PctI	GAATGC	3 cut(s)	568, 592, 616
PkrI	GCNGC	2 cut(s)	352, 616
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	447, 483
PspGI	CCWGG	2 cut(s)	447, 483
PspN4I	GGNNCC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	125, 150, 321, 627
SatI	GCNGC	2 cut(s)	351, 615
Sau3AI	GATC	2 cut(s)	33, 75
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	449, 485
SduI	GDGCHC	2 cut(s)	441, 456
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	3 cut(s)	47, 488, 539
SfcI	CTRYAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	159, 335, 525
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	447, 483
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	456, 533
TasI	AATT	3 cut(s)	159, 335, 525
Tru1I	TTAA	4 cut(s)	125, 150, 321, 627
Tru9I	TTAA	4 cut(s)	125, 150, 321, 627
TseI	GCWGC	2 cut(s)	350, 614
TspDTI	ATGAA	4 cut(s)	183, 275, 305, 411
TspGWI	ACGGA	1 cut(s)	110
XapI	RAATTY	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.